CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V     GL  G HGFH+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V     GL  G HGFH+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.893e-20
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  324 VEGVVTLTQEDGGPTTVNVRVTGLTPG-PHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            V+G V   +E      ++V ++GL P   HGFH+HE GD T+GC S  AHFNP    HG P  ++RH GDLGNI+A+ NG A+ +  D+ I
Sbjct:   45 VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMI 134          

HSP 2 Score: 29.6462 bits (65), Expect = 7.893e-20
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            G   ++GRA V H   DDLG GG+  SL
Sbjct:  138 GKCNIIGRAIVVHADTDDLGLGGNAESL 165          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.972e-20
Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            ++G S + G VT  Q D   PTTV+  +TG        FH+H++GD TNGC S G HFNP    HGAP+DE RH GDLGN   +A G A  +  D  I
Sbjct:    7 VRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLI 104          

HSP 2 Score: 26.5646 bits (57), Expect = 7.972e-20
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGH 675
            G  +V+GR  V H   DDLG+  H
Sbjct:  108 GAESVLGRTLVIHAGTDDLGRSEH 131          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.175e-17
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  363 PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNI 542
            P ++   +  L  G HGFH+HE+GDT+NGC S G HFNP    HGAP    RH GDLGN+
Sbjct:   25 PVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNV 84          

HSP 2 Score: 32.3426 bits (72), Expect = 1.175e-17
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GP +++GR+ V H   DDLG G H LS
Sbjct:  106 GPLSILGRSLVVHTDRDDLGLGEHPLS 132          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.632e-16
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  306 LKGTSN-VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNI 542
            LKGT+  V G V   QE D  P  +  ++ GL PG HGFH+H +GD TN              TH  P D+ RH GDLGN+
Sbjct:    8 LKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGNV 88          

HSP 2 Score: 38.5058 bits (88), Expect = 1.632e-16
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP +++GR  V HE  DDLGKGG++ SL
Sbjct:  102 GPLSIIGRTMVIHEKADDLGKGGNDESL 129          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.370e-12
Identity = 39/81 (48.15%), Postives = 42/81 (51.85%), Query Frame = 3
Query:  330 GVVTLTQEDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAE 569
            G V  TQ  G    VN  V GL PG   G H+H YG   N C+  G HFNP N  HG      RHAGDLGNI     GVA+
Sbjct:   47 GAVWFTQH-GDYMYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAK 126          

HSP 2 Score: 24.2534 bits (51), Expect = 3.370e-12
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:  619 VGRAFVXHELEDDLGKGGHE 678
            +GRA V H   DDLG+   E
Sbjct:  143 IGRALVIHANRDDLGRNRDE 162          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 45/96 (46.88%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  418 TYTNMVIRQMGVCQQEHISILIT*HTVLLKMKCDTRVTWET*LLTPMVWQKQ------QLWTTRYHWXGPNTVVGRAFVXHELEDDLGKGGHELSL 687
            TY +MVI QMGV QQ+HI I        +   C          L  +V   +      Q W  RYH   PN+VVGRA V HEL+DDLGKGGHELSL
Sbjct:   93 TYMSMVIPQMGVSQQDHILIQ------QVDTWCSEDEIRHAGDLGNIVANAEGVAECRQSWQIRYHSLRPNSVVGRALVVHELQDDLGKGGHELSL 182          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 2.071e-11
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 3
Query:  408 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIV 545
            H  H+HE+GD + GC STG H+NP  + H       +H GD GN V
Sbjct:  118 HAIHVHEFGDLSQGCESTGPHYNPLGVPH------PQHPGDFGNFV 157          

HSP 2 Score: 39.2762 bits (90), Expect = 2.071e-11
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP++++GRA V H  EDDLGKGG++ S+
Sbjct:  176 GPHSILGRAVVVHAGEDDLGKGGNQASV 203          
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC_DROPB7.368e-2051.09Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI7.368e-2051.09Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_PBCV17.893e-2046.15Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC_ASPFL7.972e-2046.94Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
SODC_NPVOP1.175e-1753.33Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODC_LAMCR1.632e-1643.21Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODE_SCHMA3.370e-1248.15Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODCP_POPTM1.260e-1146.88Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODE_RAT2.071e-1145.65Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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