CF417320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 + +G V QE P V GL G HGFH+HE+GD TNGCMS+G HFNP N HGAP DE RH GDLGNI A + +I D++I Sbjct: 4 DAKGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 + +G V QE P V GL G HGFH+HE+GD TNGCMS+G HFNP N HGAP DE RH GDLGNI A + +I D++I Sbjct: 4 DAKGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.893e-20 Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 324 VEGVVTLTQEDGGPTTVNVRVTGLTPG-PHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 V+G V +E ++V ++GL P HGFH+HE GD T+GC S AHFNP HG P ++RH GDLGNI+A+ NG A+ + D+ I Sbjct: 45 VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMI 134 HSP 2 Score: 29.6462 bits (65), Expect = 7.893e-20 Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 G ++GRA V H DDLG GG+ SL Sbjct: 138 GKCNIIGRAIVVHADTDDLGLGGNAESL 165
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 7.972e-20 Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 ++G S + G VT Q D PTTV+ +TG FH+H++GD TNGC S G HFNP HGAP+DE RH GDLGN +A G A + D I Sbjct: 7 VRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLI 104 HSP 2 Score: 26.5646 bits (57), Expect = 7.972e-20 Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGH 675 G +V+GR V H DDLG+ H Sbjct: 108 GAESVLGRTLVIHAGTDDLGRSEH 131
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.175e-17 Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 3 Query: 363 PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNI 542 P ++ + L G HGFH+HE+GDT+NGC S G HFNP HGAP RH GDLGN+ Sbjct: 25 PVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNV 84 HSP 2 Score: 32.3426 bits (72), Expect = 1.175e-17 Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 GP +++GR+ V H DDLG G H LS Sbjct: 106 GPLSILGRSLVVHTDRDDLGLGEHPLS 132
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.632e-16 Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 3 Query: 306 LKGTSN-VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNI 542 LKGT+ V G V QE D P + ++ GL PG HGFH+H +GD TN TH P D+ RH GDLGN+ Sbjct: 8 LKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGNV 88 HSP 2 Score: 38.5058 bits (88), Expect = 1.632e-16 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GP +++GR V HE DDLGKGG++ SL Sbjct: 102 GPLSIIGRTMVIHEKADDLGKGGNDESL 129
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.370e-12 Identity = 39/81 (48.15%), Postives = 42/81 (51.85%), Query Frame = 3 Query: 330 GVVTLTQEDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAE 569 G V TQ G VN V GL PG G H+H YG N C+ G HFNP N HG RHAGDLGNI GVA+ Sbjct: 47 GAVWFTQH-GDYMYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAK 126 HSP 2 Score: 24.2534 bits (51), Expect = 3.370e-12 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1 Query: 619 VGRAFVXHELEDDLGKGGHE 678 +GRA V H DDLG+ E Sbjct: 143 IGRALVIHANRDDLGRNRDE 162
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 45/96 (46.88%), Postives = 52/96 (54.17%), Query Frame = 1 Query: 418 TYTNMVIRQMGVCQQEHISILIT*HTVLLKMKCDTRVTWET*LLTPMVWQKQ------QLWTTRYHWXGPNTVVGRAFVXHELEDDLGKGGHELSL 687 TY +MVI QMGV QQ+HI I + C L +V + Q W RYH PN+VVGRA V HEL+DDLGKGGHELSL Sbjct: 93 TYMSMVIPQMGVSQQDHILIQ------QVDTWCSEDEIRHAGDLGNIVANAEGVAECRQSWQIRYHSLRPNSVVGRALVVHELQDDLGKGGHELSL 182
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2) HSP 1 Score: 50.0618 bits (118), Expect = 2.071e-11 Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 3 Query: 408 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIV 545 H H+HE+GD + GC STG H+NP + H +H GD GN V Sbjct: 118 HAIHVHEFGDLSQGCESTGPHYNPLGVPH------PQHPGDFGNFV 157 HSP 2 Score: 39.2762 bits (90), Expect = 2.071e-11 Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GP++++GRA V H EDDLGKGG++ S+ Sbjct: 176 GPHSILGRAVVVHAGEDDLGKGGNQASV 203 The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bpback to top |