CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 3.538e-28
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ I
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVI 105

HSP 2 Score: 36.5798 bits (83), Expect = 3.538e-28
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHSIIGRTLVVHEKADDLGKGGNEES 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 3.538e-28
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ I
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVI 105

HSP 2 Score: 36.5798 bits (83), Expect = 3.538e-28
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHSIIGRTLVVHEKADDLGKGGNEES 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 3.538e-28
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ I
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVI 105

HSP 2 Score: 36.5798 bits (83), Expect = 3.538e-28
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHSIIGRTLVVHEKADDLGKGGNEES 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.998e-28
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G++   Q E  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ I
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVI 105

HSP 2 Score: 35.8094 bits (81), Expect = 5.998e-28
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G + ++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHCIIGRTLVVHEKADDLGKGGNEES 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.998e-28
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G++   Q E  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ I
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVI 105

HSP 2 Score: 35.8094 bits (81), Expect = 5.998e-28
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G + ++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHCIIGRTLVVHEKADDLGKGGNEES 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.003e-28
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +KG   V GVV  TQE+   P TVN  +TGL  G HGFH+H +GDTTNGC+S G HFNP    HGAP DE RH GDLGNIVA+     + TI D  I
Sbjct:    9 IKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKII 104

HSP 2 Score: 34.6538 bits (78), Expect = 6.003e-28
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            G +T+VGR  V H  +DDLGKGG   SL
Sbjct:  108 GEHTIVGRTMVVHADQDDLGKGGKPDSL 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.003e-28
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QED   P  V   +TGL  G HGFH+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +G  +  I D++I
Sbjct:   12 DAKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKI 103

HSP 2 Score: 40.817 bits (94), Expect = 6.003e-28
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G N++VGR  V H   DDLGKGGHELS
Sbjct:  107 GENSIVGRTVVVHADPDDLGKGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.742e-28
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGP-TTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATI 578
            L+G + V G++   Q  GG  TT++  V+GLTPG HGFH+H+YGD TNGC S G H+NP   THG P D ++H GDLGNIVA ANGVAE  I
Sbjct:   51 LRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYI 142

HSP 2 Score: 27.7202 bits (60), Expect = 7.742e-28
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKG 669
            GP +V+G + V H   DDLG+G
Sbjct:  151 GPLSVIGHSLVVHANTDDLGQG 172
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.316e-27
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 3 
Query:  324 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            V G + +TQ+ +     +   + GLTPG HGFH+H+YGD+TNGC+S G HFNP   THG PK E+RH GDLGN+ A A+GVA+  + D  +
Sbjct:   36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLV 126

HSP 2 Score: 36.1946 bits (82), Expect = 1.316e-27
Identity = 18/34 (52.94%), Postives = 22/34 (64.71%), Query Frame = 1 
Query:  568 KQQLWTTRYHWXGPNTVVGRAFVXHELEDDLGKG 669
            K +L  T     GPNTVVGR+ V H  +DDLG+G
Sbjct:  118 KIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEG 151
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.723e-27
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG + V GVV   Q  +  PTTV+  + G +P    GFH+HE+GD TNGC+S G HFNP   THGAP DEVRH GD+GN+  + NGVA+ +  D+ I
Sbjct:    8 LKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLI 105

HSP 2 Score: 35.8094 bits (81), Expect = 1.723e-27
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP +VVGR+ V H  +DDLGKG  E SL
Sbjct:  109 GPTSVVGRSVVIHAGQDDLGKGDTEESL 136
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC_MACMU3.538e-2852.58Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU3.538e-2852.58Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA3.538e-2852.58Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_PANTR5.998e-2852.58Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN5.998e-2852.58Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC1_DICDI6.003e-2856.70Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_CHYAM6.003e-2854.35Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODE_ONCVO7.742e-2857.61Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAEEL1.316e-2750.55Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC_YEAST1.723e-2752.04Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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