CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.725e-27
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA+  IVD+ I
Sbjct:    9 LKGDGPVQGTIRF-EAKGHTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLI 103          

HSP 2 Score: 35.4242 bits (80), Expect = 1.725e-27
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLG+GG+E S
Sbjct:  107 GEHSIIGRTMVVHEKPDDLGRGGNEES 133          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.725e-27
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVN--VRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584
            L+G     G V   QE G    V   + + GLTPG HGFH+H +GD TNGC+S G HFNP +  H  PKDE RH GDLGN+ A+ANGVA+  I D
Sbjct:    9 LRGAGETTGTVYFEQE-GNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD 102          

HSP 2 Score: 39.2762 bits (90), Expect = 1.725e-27
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  583 TTRYHWXGPNTVVGRAFVXHELEDDLGKGGHELSL 687
            T +    GP +++GR  V HE  DDLG+GG+E SL
Sbjct:  101 TDKISLTGPYSIIGRTMVIHEKADDLGRGGNEESL 135          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.921e-27
Identity = 50/93 (53.76%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQI 593
            +V G V   Q+D   P  V+  V GLT G HGFH+HE+GD TNGC S GAHFNP    HG P   VRH GDLGNI A   +GV + +I D+QI
Sbjct:   12 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 104          

HSP 2 Score: 41.2022 bits (95), Expect = 2.921e-27
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN+++GR  V H   DDLG GGHELS
Sbjct:  108 GPNSIIGRTLVVHADPDDLGLGGHELS 134          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.923e-27
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   VEG +   Q+  GP  V+  +TGLT G HGFH+H++ D T GC S G HFNP +  HG PKD+ RH GDLGN+ A  +GVA  +I D+ I
Sbjct:    9 LKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLI 104          

HSP 2 Score: 33.113 bits (74), Expect = 2.923e-27
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR  V HE  DDLGKG +E S
Sbjct:  108 GDYSIIGRTMVVHEKRDDLGKGDNEES 134          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.802e-27
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G +   Q E  GP  V   +TGL  G HGFH+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ I
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVI 105          

HSP 2 Score: 36.5798 bits (83), Expect = 3.802e-27
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHSIIGRTLVVHEKADDLGKGGNEES 135          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.802e-27
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G +   Q E  GP  V   +TGL  G HGFH+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ I
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVI 105          

HSP 2 Score: 36.5798 bits (83), Expect = 3.802e-27
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V HE  DDLGKGG+E S
Sbjct:  109 GDHSIIGRTLVVHEKADDLGKGGNEES 135          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.802e-27
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGN+  +A G A+ +I D+Q+
Sbjct:    8 LRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQV 105          

HSP 2 Score: 38.1206 bits (87), Expect = 3.802e-27
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP++V+GR  V H   DDLGKGG+E SL
Sbjct:  109 GPHSVIGRTVVVHAGTDDLGKGGNEESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.408e-27
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  324 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            V G + +TQ  +  P  +   + GLTPG HGFH+H+YGD+TNGC+S G HFNP   THG P  E RH GDLGN+ A A+GVA+  I D  I
Sbjct:   36 VSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLI 126          

HSP 2 Score: 32.3426 bits (72), Expect = 6.408e-27
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKG 669
            G NTV+GR+ V H  +DDLG+G
Sbjct:  130 GANTVIGRSMVVHAGQDDLGQG 151          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 8.396e-27
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD+ I
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLI 103          

HSP 2 Score: 34.2686 bits (77), Expect = 8.396e-27
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR  V HE  DDLG+GG+E S
Sbjct:  107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.095e-26
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  321 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE +  P  V   VTGL  G HGFH+HE+GD TNGCMS+G HFNP    HGAP DE RH GDLGNI A  +G     I D +I
Sbjct:    4 DAKGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKI 95          

HSP 2 Score: 40.4318 bits (93), Expect = 1.095e-26
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G N+++GR  V H   DDLGKGGHELS
Sbjct:   99 GANSIIGRTVVVHADPDDLGKGGHELS 125          
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC_CEREL1.725e-2752.08Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_XIPGL1.725e-2752.63Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_BOMMO2.921e-2753.76Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_CANFA2.923e-2751.04Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_CEBAP3.802e-2750.52Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_CALJA3.802e-2750.52Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_PAETN3.802e-2750.00Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_CAEBR6.408e-2752.75Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_BOSMU8.396e-2752.08Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_DROBS1.095e-2653.26Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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