CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.851e-26
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  306 LKG-TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG  S V+G++   Q++  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA  +I D+ I
Sbjct:    9 LKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVI 106          

HSP 2 Score: 35.8094 bits (81), Expect = 1.851e-26
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G + ++GR  V HE  DDLGKGG+E S
Sbjct:  110 GDHCIIGRTLVVHEKADDLGKGGNEES 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.411e-26
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVD 100          

HSP 2 Score: 34.2686 bits (77), Expect = 2.411e-26
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR  V HE  DDLG+GG+E S
Sbjct:  107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 3.136e-26
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGNI  +  G A+ ++ D+ +
Sbjct:    8 LRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHV 105          

HSP 2 Score: 38.1206 bits (87), Expect = 3.136e-26
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP++VVGR  V H   DDLGKGG+E SL
Sbjct:  109 GPHSVVGRTVVVHGGTDDLGKGGNEESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.139e-26
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD
Sbjct:    9 LKGDGPVQGTIRF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD 100          

HSP 2 Score: 34.2686 bits (77), Expect = 3.139e-26
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR  V HE  DDLG+GG+E S
Sbjct:  107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 4.082e-26
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            LKG S V GV+T TQE +G P TV+  +  L      GFH+HE+GD TNGC S G HFNP+   HGAP D  RH GDLGN+  + NGVA   I D  +
Sbjct:    8 LKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSL 105          

HSP 2 Score: 33.113 bits (74), Expect = 4.082e-26
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP +++GR  V H   DD GKGG+  SL
Sbjct:  109 GPYSIIGRTIVVHAGTDDFGKGGNAESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.082e-26
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            ++G SNV+G V   QE +  PTT+   ++G  P    GFH+H +GD TNGC S G HFNP+  THG    EVRH GDLGNI  +A G A+ T+ DN +
Sbjct:    8 VRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLV 105          

HSP 2 Score: 37.7354 bits (86), Expect = 4.082e-26
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP +V+GR  V H   DDLGKGG+E SL
Sbjct:  109 GPESVIGRTVVVHAGTDDLGKGGNEESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.086e-26
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD
Sbjct:    9 LKGDGPVQGTIHF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD 100          

HSP 2 Score: 34.2686 bits (77), Expect = 4.086e-26
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR  V HE  DDLG+GG+E S
Sbjct:  107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.181e-26
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 3
Query:  408 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            HGFH+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQI 69          

HSP 2 Score: 40.0466 bits (92), Expect = 4.181e-26
Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GRA V H   DDLGKGGHELS
Sbjct:   73 GAHSIIGRAVVVHADPDDLGKGGHELS 99          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 5.318e-26
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V   V GL  G HGFH+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:   11 DAKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 102          

HSP 2 Score: 38.5058 bits (88), Expect = 5.318e-26
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G ++++GR  V H   DDLGKGGHELS
Sbjct:  106 GADSIIGRTVVVHADADDLGKGGHELS 132          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.318e-26
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +V+G V   Q+D   P  V   V GL  G HGFH+HE+GD TNGC S G HFNP   +HGAP D  RH GDLGNI A+ +G  +  I D  I
Sbjct:   12 DVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLI 103          

HSP 2 Score: 41.2022 bits (95), Expect = 5.318e-26
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G N++VGR  V H   DDLGKGGHELS
Sbjct:  107 GENSIVGRTIVVHADPDDLGKGGHELS 133          
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC_PONPY1.851e-2652.04Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_BOVIN2.411e-2652.69Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_CORMI3.136e-2647.96Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_SHEEP3.139e-2652.69Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CRYGA4.082e-2652.04Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_NEUCR4.082e-2648.98Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_CAPHI4.086e-2652.69Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_ASPJA4.181e-2669.35Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_DROPS5.318e-2652.17Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_CERCA5.318e-2651.09Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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