CF417320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 1.851e-26 Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 306 LKG-TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 LKG S V+G++ Q++ GP V + GLT G HGFH+HE+GD T GC S G HFNP + HG PKDE RH GDLGN+ A+ +GVA +I D+ I Sbjct: 9 LKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVI 106 HSP 2 Score: 35.8094 bits (81), Expect = 1.851e-26 Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G + ++GR V HE DDLGKGG+E S Sbjct: 110 GDHCIIGRTLVVHEKADDLGKGGNEES 136
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.411e-26 Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584 LKG V+G + + G V +TGLT G HGFH+H++GD T GC S G HFNP + HG PKDE RH GDLGN+ A+ NGVA IVD Sbjct: 9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVD 100 HSP 2 Score: 34.2686 bits (77), Expect = 2.411e-26 Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G +++GR V HE DDLG+GG+E S Sbjct: 107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 3.136e-26 Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 L+G + V G VT QE + PTT+ +TG P GFH+H +GD TNGC S G HFNP+ THGAP D RH GDLGNI + G A+ ++ D+ + Sbjct: 8 LRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHV 105 HSP 2 Score: 38.1206 bits (87), Expect = 3.136e-26 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GP++VVGR V H DDLGKGG+E SL Sbjct: 109 GPHSVVGRTVVVHGGTDDLGKGGNEESL 136
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.139e-26 Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584 LKG V+G + + G V +TGLT G HGFH+H++GD T GC S G HFNP + HG PKDE RH GDLGN+ A+ NGVA IVD Sbjct: 9 LKGDGPVQGTIRF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD 100 HSP 2 Score: 34.2686 bits (77), Expect = 3.139e-26 Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G +++GR V HE DDLG+GG+E S Sbjct: 107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 4.082e-26 Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 LKG S V GV+T TQE +G P TV+ + L GFH+HE+GD TNGC S G HFNP+ HGAP D RH GDLGN+ + NGVA I D + Sbjct: 8 LKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSL 105 HSP 2 Score: 33.113 bits (74), Expect = 4.082e-26 Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GP +++GR V H DD GKGG+ SL Sbjct: 109 GPYSIIGRTIVVHAGTDDFGKGGNAESL 136
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 4.082e-26 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 ++G SNV+G V QE + PTT+ ++G P GFH+H +GD TNGC S G HFNP+ THG EVRH GDLGNI +A G A+ T+ DN + Sbjct: 8 VRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLV 105 HSP 2 Score: 37.7354 bits (86), Expect = 4.082e-26 Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GP +V+GR V H DDLGKGG+E SL Sbjct: 109 GPESVIGRTVVVHAGTDDLGKGGNEESL 136
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 4.086e-26 Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3 Query: 306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584 LKG V+G + + G V +TGLT G HGFH+H++GD T GC S G HFNP + HG PKDE RH GDLGN+ A+ NGVA IVD Sbjct: 9 LKGDGPVQGTIHF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD 100 HSP 2 Score: 34.2686 bits (77), Expect = 4.086e-26 Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G +++GR V HE DDLG+GG+E S Sbjct: 107 GEYSIIGRTMVVHEKPDDLGRGGNEES 133
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.181e-26 Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 3 Query: 408 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 HGFH+H GDTTNGCMSTG HFNP HGAP+DE RHAGDLGNI A A+GVA + D+QI Sbjct: 8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQI 69 HSP 2 Score: 40.0466 bits (92), Expect = 4.181e-26 Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G ++++GRA V H DDLGKGGHELS Sbjct: 73 GAHSIIGRAVVVHADPDDLGKGGHELS 99
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 5.318e-26 Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 3 Query: 321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 + +G V QE P V V GL G HGFH+HE+GD TNGCMS+G HFNP N HGAP DE RH GDLGNI A + +I D++I Sbjct: 11 DAKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 102 HSP 2 Score: 38.5058 bits (88), Expect = 5.318e-26 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G ++++GR V H DDLGKGGHELS Sbjct: 106 GADSIIGRTVVVHADADDLGKGGHELS 132
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 5.318e-26 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 +V+G V Q+D P V V GL G HGFH+HE+GD TNGC S G HFNP +HGAP D RH GDLGNI A+ +G + I D I Sbjct: 12 DVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLI 103 HSP 2 Score: 41.2022 bits (95), Expect = 5.318e-26 Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 G N++VGR V H DDLGKGGHELS Sbjct: 107 GENSIVGRTIVVHADPDDLGKGGHELS 133 The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bpback to top |