CF417325

Overview
NameCF417325
Unique NameCF417325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 2
Query:   80 VNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            +NHAV+ VGYGVE+ VP+W  KN+WG++WG+ GYF++    + CG+
Sbjct:  272 LNHAVLLVGYGVENNVPFWTFKNTWGKDWGEEGYFRVRQNVDACGM 317          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   29 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            YKSGV    K  +    +NH V+ VGYG E+ V YW +KNSWG +WG+ G+F+++   N CGI
Sbjct:  273 YKSGV---AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V + F  YKSGVY             HA+  +G+GVE+G PYWL  NSW  +WG  G+FK+  G++ CGI
Sbjct:  254 FIVYEDFLMYKSGVYQHVSGEQVG---GHAIRILGWGVENGTPYWLAANSWNTDWGITGFFKILRGEDHCGI 322          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   17 GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 241
            GF+FYK G+Y    CG    + +HAV AVGYG      Y L+KNSWG NWG+ GY +++      K  CG+ T + +P+
Sbjct:  140 GFQFYKGGIYEGP-CGT---NTDHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = 2
Query:   23 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  270 KLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 2
Query:   80 VNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 232
            +NH V+ VGYG     P       YW+IKNSWGENWG++GY+K+  G+N+CG+ +  S
Sbjct:   29 LNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVS 86          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV-----PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 244
            ++FY  GV+    C   P  ++H ++ VGY  ++ +     PYW++KNSWG +WG+ GY  +  GKN CG++   S  ++
Sbjct:  267 WQFYIGGVFD-IPCN--PNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII 343          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 2
Query:   29 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 232
            Y SGV     C  + +D  H V+ VG+G     P       YW+IKNSWG+NWG+ GY+K+  G+N+CG+ +  S
Sbjct:  282 YMSGVSCPYVCAKSRLD--HGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVS 354          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   26 FYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  231 YYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
The following BLAST results are available for this feature:
BLAST of CF417325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATV_NPVBS2.056e-1152.17Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_GVXN2.056e-1147.62Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATB_CHICK2.056e-1144.44Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
MEX1_JACME2.685e-1143.04Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATW_FELCA4.580e-1135.48Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
PAPA5_CARPA5.982e-1148.28Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI5.982e-1135.00Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP_PEA7.813e-1141.33Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CATB1_GIALA7.813e-1149.23Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-255 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417325 ID=CF417325; Name=CF417325; organism=Citrus sinensis; type=EST; length=520bp
ATTTGAAGTAGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCA
GCACTAAATGTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCT
GTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTC
TTGGGGAGAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGA
AGAACATGTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAG
TCTGCTCCTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTC
ATAAAACTTATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTT
ATGTACGAAATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAA
TGCATGGCTGCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTA
AACAGTCATTGTGACTAGGACACCAACGATGTTATATATATTTTGTCAAT
GCAAGGTAGTTGTTATATGG
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