CF417325

Overview
NameCF417325
Unique NameCF417325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE---DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 244
            F+FYKSG+Y    C +   D++H V+ VGYG E       +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  257 FQFYKSGIYFDPDCSSK--DLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 333          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 244
            F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  257 FQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 244
            F  Y+SGVY    C     +VNH V+ VGYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  259 FFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 331          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 241
            F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+HGY +M+      + +CGIA   SYP+
Sbjct:  270 FQFYSEGVFT----GDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPSYPI 344          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 244
            F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGI+T ASYP V
Sbjct:  257 FQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAASYPTV 334          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   14 DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 241
            D F+ Y SG+++   CG     ++HAV  VGYG E G+ YW++KNSW   WG+ GY ++     G   CGIAT  SYPV
Sbjct:  268 DAFKHYSSGIFTGP-CGTA---IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 342          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 2
Query:   17 GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 244
            G +FY+ G+    +   +P  ++HAV+ VGYG    +PYW IKNSWG +WG+ GY+ +  G   CG+ T AS  VV
Sbjct:  386 GMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSNIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMASSAVV 461          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGN-----TPMDV-NHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            FEV + F+FYK G+Y  T          P ++ NHAV+ VGYGV+   G PYW +KNSWG  WG+ GYF++  G + CG+
Sbjct:  364 FEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGV 443          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   14 DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 241
            D F+ Y SG+++   CG     V+HAV  VGYG E G+ YW++KNSW   WG+ GY ++     G   CGIAT  SYPV
Sbjct:  268 DAFKQYSSGIFTGP-CGTA---VDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 342          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:   20 FRFYKSG-VYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM-GKNMCGIATCASYP 238
            F+ YK G +YS TKC +  M  NH V AVGYG      YW+I+NSWG +WGD GYF +     NMCGI   ++YP
Sbjct:  230 FQLYKKGTIYSDTKCRSRMM--NHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARDSNNMCGIGRDSNYP 302          
The following BLAST results are available for this feature:
BLAST of CF417325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATL1_CANFA5.228e-1549.37Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATL1_BOVIN5.228e-1548.75Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATS_HUMAN6.828e-1550.00Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CYSEP_PHAVU8.918e-1544.30Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
CATL1_PIG8.918e-1547.50Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
ACTN_ACTDE8.918e-1545.57Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CATF_MOUSE1.165e-1443.42Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATC_SCHMA1.165e-1446.25Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
ACTN_ACTCH1.165e-1446.84Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
ACP1_ENTHI1.165e-1450.67Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-255 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417325 ID=CF417325; Name=CF417325; organism=Citrus sinensis; type=EST; length=520bp
ATTTGAAGTAGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCA
GCACTAAATGTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCT
GTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTC
TTGGGGAGAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGA
AGAACATGTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAG
TCTGCTCCTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTC
ATAAAACTTATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTT
ATGTACGAAATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAA
TGCATGGCTGCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTA
AACAGTCATTGTGACTAGGACACCAACGATGTTATATATATTTTGTCAAT
GCAAGGTAGTTGTTATATGG
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