CF417325

Overview
NameCF417325
Unique NameCF417325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 2
Query:   83 NHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            NHAV+ VGYGVE+ VPYW++KN+WGE+WG+ GYF+++   N CGI
Sbjct:  269 NHAVLLVGYGVENNVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   29 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            Y+ G+     C N  +  NHAV+ VGYGVE+ VPYW++KNSWG +WG+ G+FK++   N CGI
Sbjct:  254 YEQGIIKY--CANNGL--NHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNVNACGI 312          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 2
Query:   29 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            YK+G+  +  C N    +NHAV+ VGYGV++ VPYW++KNSWG  WG+ GYF+++  KN CG+
Sbjct:  264 YKAGI--ADICENNE-GLNHAVLLVGYGVKNDVPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 229
            FEV D F  YK G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  374 FEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 241
            F+ Y+SGV+  + CG    ++NH VV VGYG E+G  YWL+KNS G  WG+ GY KM       + +CGIA  ASYP+
Sbjct:  279 FQLYESGVFDGS-CGT---NLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANPRGLCGIAMRASYPL 352          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 241
            F+ Y+SG+++    G+  +  NHA+  VGYG E+   +W++KNSWG+NWG+ GY + E         CGI   ASYPV
Sbjct:  143 FQLYRSGIFT----GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F  YKSGVY   + G+      HA+  +G+G+E+GVPYWL+ NSW  +WGD+G+FK+  G+N CGI
Sbjct:  253 FTVFSDFLTYKSGVYKH-EAGDVMG--GHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCGI 321          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  253 FSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F  YKSGVY   + G+  M   HA+  +G+GVE+GVPYWL  NSW  +WGD+G+FK+  G+N CGI
Sbjct:  253 FTVFSDFLTYKSGVYKH-EAGD--MMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGI 321          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  253 FSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
The following BLAST results are available for this feature:
BLAST of CF417325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATV_NPVHC7.550e-1462.22Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_NPVEP7.550e-1450.79Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATV_GVCP7.550e-1450.79Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATC_PONAB7.550e-1444.44Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CPR3_ARATH9.860e-1448.72Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CPGP2_ZINOF9.860e-1442.31Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATB_RAT9.860e-1448.61Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_PONAB9.860e-1447.22Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MOUSE9.860e-1451.39Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA9.860e-1447.22Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-255 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417325 ID=CF417325; Name=CF417325; organism=Citrus sinensis; type=EST; length=520bp
ATTTGAAGTAGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCA
GCACTAAATGTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCT
GTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTC
TTGGGGAGAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGA
AGAACATGTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAG
TCTGCTCCTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTC
ATAAAACTTATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTT
ATGTACGAAATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAA
TGCATGGCTGCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTA
AACAGTCATTGTGACTAGGACACCAACGATGTTATATATATTTTGTCAAT
GCAAGGTAGTTGTTATATGG
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