CF417325

Overview
NameCF417325
Unique NameCF417325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  253 FSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPV 241
            F+ Y SG++  + CG     ++H VVAVGYG E+G  YW+++NSWG++WG+ GY +M          CGIA   SYP+
Sbjct:  279 FQLYDSGIFDGS-CGT---QLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYPI 352          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   29 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            Y+SG+  +T C +  +  NHAV+ VGYG+E+  PYW+ KNSWG NWG++GYF+     N CG+
Sbjct:  268 YRSGI--ATVCNDNGL--NHAVLLVGYGIENDTPYWIFKNSWGSNWGENGYFRARRNINACGM 326          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 229
            FEV D F  Y++G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG +WG+ GYF++  G + C I + A
Sbjct:  374 FEVYDDFLHYQNGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V + F  YKSGVY  T          HA+  +G+G E G PYWL+ NSWG NWG+ G+FK+  G + CGI
Sbjct:  250 FSVYEDFYKYKSGVYKHTAGKYLG---GHAIKIIGWGTESGSPYWLVANSWGVNWGESGFFKIYRGDDQCGI 318          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   20 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 241
            F+ Y SGV++  +CG    +++H VVAVGYG +   G  YW ++NSWG +WG++GY +ME         CGIA  ASYP+
Sbjct:  299 FQLYDSGVFTG-RCGT---NLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTARTGKCGIAMMASYPI 374          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   14 DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED------GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            +  +FY+ GV    K   +  +++H V+ VGYGV D       +PYW++KNSWG  WG+ GY+++  G N CG++  A+  V+A
Sbjct:  531 NAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 2
Query:   80 VNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            +NHAV+ VGYGVE+G+P+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  268 LNHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 229
            FEV D F  Y SG+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  373 FEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 453          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 217
            F V   F +Y+SGVY  T      M+  HAV  VGYG +D GV YW+IKNSWG +WG+ GYF+M  G N C I
Sbjct:  220 FLVHSDFMYYESGVYQHTY---GYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSI 289          
The following BLAST results are available for this feature:
BLAST of CF417325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATB_HUMAN9.860e-1447.22Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
RD21A_ARATH1.288e-1343.59Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CATV_NPVST1.288e-1349.21Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATC_MACFA1.288e-1343.21Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CPR1_CAEEL1.682e-1347.22Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
CYSP1_ORYSJ2.197e-1345.00Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CPR1_DROME2.197e-1338.10Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATV_NPVAP2.197e-1356.52Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATC_RAT2.197e-1344.44Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATB2_GIALA2.197e-1352.05Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-255 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417325 ID=CF417325; Name=CF417325; organism=Citrus sinensis; type=EST; length=520bp
ATTTGAAGTAGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCA
GCACTAAATGTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCT
GTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTC
TTGGGGAGAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGA
AGAACATGTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAG
TCTGCTCCTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTC
ATAAAACTTATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTT
ATGTACGAAATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAA
TGCATGGCTGCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTA
AACAGTCATTGTGACTAGGACACCAACGATGTTATATATATTTTGTCAAT
GCAAGGTAGTTGTTATATGG
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