CF417341

Overview
NameCF417341
Unique NameCF417341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.151e-72
Identity = 135/227 (59.47%), Postives = 166/227 (73.13%), Query Frame = 1
Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A  D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.390e-71
Identity = 133/226 (58.85%), Postives = 165/226 (73.01%), Query Frame = 1
Query:    4 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AARPL+TV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS E ++KT  A+ VL+++ A+ D EK K+S+  R GKGK+RNRR I R+GPL +Y  +   + +AFRNI
Sbjct:    2 AARPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQRRGPLIIYGTDNG-ISRAFRNI 223          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.816e-71
Identity = 132/227 (58.15%), Postives = 170/227 (74.89%), Query Frame = 1
Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AAARP V++ S +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS+KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFG   R GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +  +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPL V++ E A +VKAFRNI
Sbjct:    2 AAARPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDAGIVKAFRNI 224          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.045e-71
Identity = 133/225 (59.11%), Postives = 165/225 (73.33%), Query Frame = 1
Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFR 675
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFR
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFR 222          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.622e-70
Identity = 130/227 (57.27%), Postives = 169/227 (74.45%), Query Frame = 1
Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AAARP V++ + +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS+KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFG   R GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +  +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPL V++ E   +VKAFRNI
Sbjct:    2 AAARPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDTGIVKAFRNI 224          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.759e-66
Identity = 129/225 (57.33%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    7 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            +RP VTV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS+KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFG   RGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   E ++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPL VY AE   +VKA RN+
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY-AEDNGIVKALRNV 222          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 252.292 bits (643), Expect = 1.759e-66
Identity = 129/225 (57.33%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    7 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            +RP VTV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS+KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFG   RGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   E ++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPL VY AE   +VKA RN+
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY-AEDNGIVKALRNV 222          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 8.170e-64
Identity = 127/225 (56.44%), Postives = 160/225 (71.11%), Query Frame = 1
Query:    7 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            ARPLV+V + + + A D +  + LP V KA IRPD+V  VH  + +N+RQ YAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT  A+  L+++  +AD +K   SQ  R G+G MR+RR I+R+GPL VY  +   L KAFRNI
Sbjct:    6 ARPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDEG-LRKAFRNI 227          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.033e-63
Identity = 123/225 (54.67%), Postives = 156/225 (69.33%), Query Frame = 1
Query:   10 RPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            RP V V   +  +       V LP+V+   IRPD+V FVH+N++KN+RQ Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFG   RGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S + ++KT AA+++LK+I AYAD  K  DS+ IR G GK RNRRY  RKGPL V S +   + +A RNI
Sbjct:    4 RPFVQVFDAQNKVV----GKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGK-TTVSQALRNI 223          
BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.541e-62
Identity = 124/225 (55.11%), Postives = 153/225 (68.00%), Query Frame = 1
Query:    7 ARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            ARP V+V S   D       T  LP V  A IR D+V FVH+N++KNSRQPYAV++ +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFG   RGGRMFAPTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D     EKT  A+  LK +GA  D  +  DS+ IR G+GKMRNRRY++R+GP+ V      K  +AFRNI
Sbjct:    3 ARPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRNRRYVARRGPMLVMPDN--KGTRAFRNI 222          
The following BLAST results are available for this feature:
BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PONAB8.151e-7259.4760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_URECA1.390e-7158.8560S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4A_SCHPO1.816e-7158.1560S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4_CANFA4.045e-7159.1160S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4B_SCHPO2.622e-7057.2760S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST1.759e-6657.3360S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST1.759e-6657.3360S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_DROME8.170e-6456.4460S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4_DICDI9.033e-6354.6760S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB1.541e-6255.1160S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-271 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bp
GCCGCTGCCCGTCCTCTTGTCACCGTCCAGTCTTTGGAAGGTGACATGGC
CACCGACGCAAGCTCCACCGTCCCCTTGCCCGACGTCATGAAGGCCTCTA
TCCGACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGC
CGCCAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGA
ATCATGGGGTACCGGTCGCGCCGTATCCCGTATCCCCCGAGTTCCCGGAG
GCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAATGTGGTCGCGGT
GGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGAT
CAACGTCAATCAAAAGCGATACGCCATCGTTTCCGCCATTGCCGCCTCCG
CTGTCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCG
GAAATGCCCCTGGTCGTCAGTGATTCCGCCGAATGTGTTGAGAAAACATC
AGCTGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGA
AGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAAT
AGGCGTTACATTTCTCGCAAGGGCCCGCTTGNTGTGTACTCAGCCGAGGG
TGCTAAGCTTGTCAAGGCTTTTAGGAACATTCC
back to top