CF417356

Overview
NameCF417356
Unique NameCF417356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_RHIE6 (Threonyl-tRNA synthetase OS=Rhizobium etli (strain CIAT 652) GN=thrS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 60/159 (37.74%), Postives = 96/159 (60.38%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIE 478
            K + ++ DA+ R++QC T Q+DF LP+RF   Y   +  KT+ PVMIHRAI GS+ER   IL+E++ G  P W+SP Q +V  ++ ++  Y L+V + +  AG  V+ D  + KI  K+RE  + +   I+V G +EA+   V++R     D  +M ++
Sbjct:  484 KFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQ-PVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALRDAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQDQVSMGLD 641          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_PHEZH (Threonyl-tRNA synthetase OS=Phenylobacterium zucineum (strain HLK1) GN=thrS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVR 439
            K+D  + D++ R + C T+QLD+ LP+R    Y AED +K +RPVM+HRAI GS+ER   +L+E+Y G +P WL+P Q +V  ++  +  YA      +   G  V++D  + KI  KVRE  LA+   I VVG  EA+ G+V++R
Sbjct:  466 KLDWVLKDSIGRTWTCGTIQLDYVLPERLGAEYVAEDGSK-QRPVMLHRAICGSLERFIGVLIENYAGAFPLWLAPVQVVVATITSDADDYARAAAAELKAKGLRVELDLRNEKINYKVREHSLAKVPVIAVVGRREAEEGKVALR 610          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_LACGA (Threonyl-tRNA synthetase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=thrS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 64/173 (36.99%), Postives = 105/173 (60.69%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQ-PYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 517
            K+DI    AL      +T+QLDF LP+RF L Y  +D  +  RPVMIHR I+G++ER  A L E YKG +P WL+P QA + PV+E++   YA +VR+ + + G+  +VD  + K+  K+RE+Q  +  + LV+G++E  +  V+VR     +  + S++D +      ++++
Sbjct:  468 KLDIQTKTALGNDETMSTIQLDFMLPERFGLTYVGQD-GEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNEEAHGAYADKVREELAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDDEMNANGVNVRRYGTEEQISKSLDDFIAEIDADVKSY 639          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_DELAS (Threonyl-tRNA synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 64/167 (38.32%), Postives = 100/167 (59.88%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRA----GYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLK 490
            KI+ ++ DA+ R++QC T+Q+DF +P+R +  Y  ED  +  RPVM+HRAI+GS+ER   IL+E + G  P WL+P QA V  +++    Y  +V   + +A    G  V  D  + KI  K+RE  L +  +ILV G++E  +G V+VR R   D   MS++  ++
Sbjct:  468 KIEYTLKDAIGRQWQCGTIQVDFSMPERLDAEYVGEDGDR-HRPVMLHRAIVGSLERFIGILIEQHAGAMPTWLAPVQAAVLNITDAQADYVREVAQKLQKAFPNQGLRVATDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAVAVRARGNKDLGVMSVDAFIE 633          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_TREPS (Threonyl-tRNA synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=thrS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLP--DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHS 463
            K++ ++ D L+R++QC T+Q+D+QLP  +R N  Y  ED  +   PV++HR ++GS+ER   IL+EHY G +P WL+P QA+V PV+     YA  V   +      V  D +  ++  K+R AQ  +  ++L+VGE E ++ QV+VR R    HS
Sbjct:  417 KLEFALIDTLEREWQCGTIQVDYQLPSCERLNAEYVGEDNQR-HMPVILHRTVIGSLERFIGILIEHYGGAFPPWLAPVQAVVIPVAPAFLEYAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPRTGPQHS 571          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_TREPA (Threonyl-tRNA synthetase OS=Treponema pallidum GN=thrS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLP--DRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHS 463
            K++ ++ D L+R++QC T+Q+D+QLP  +R N  Y  ED  +   PV++HR ++GS+ER   IL+EHY G +P WL+P QA+V PV+     YA  V   +      V  D +  ++  K+R AQ  +  ++L+VGE E ++ QV+VR R    HS
Sbjct:  417 KLEFALIDTLEREWQCGTIQVDYQLPSCERLNAEYVGEDNQR-HMPVILHRTVIGSLERFIGILIEHYGGAFPPWLAPVQAVVIPVAPAFLEYAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPRTGPQHS 571          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_STRZT (Threonyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=thrS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 64/164 (39.02%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLK 490
            K+DI +  AL ++   +T+QLDF LP+RF+L Y   D  +  RPVMIHR ++ ++ER  AIL+E+YKG +P WL+P Q  + PVS EK   YA +V   +   G   DVD  + K+Q K+R +Q ++  + L+VG++E +   V+VR   Q +   +S+++ ++
Sbjct:  471 KLDIQIKTALGKEETLSTIQLDFLLPERFDLKYIGAD-GEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTLIPVSNEKHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYGQKETQTVSVDNFVQ 633          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_STRZP (Threonyl-tRNA synthetase OS=Streptococcus pneumoniae (strain P1031) GN=thrS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 64/164 (39.02%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLK 490
            K+DI +  AL ++   +T+QLDF LP+RF+L Y   D  +  RPVMIHR ++ ++ER  AIL+E+YKG +P WL+P Q  + PVS EK   YA +V   +   G   DVD  + K+Q K+R +Q ++  + L+VG++E +   V+VR   Q +   +S+++ ++
Sbjct:  471 KLDIQIKTALGKEETLSTIQLDFLLPERFDLKYIGAD-GEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTLIPVSNEKHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYGQKETQTVSVDNFVQ 633          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_STRZJ (Threonyl-tRNA synthetase OS=Streptococcus pneumoniae (strain JJA) GN=thrS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 64/164 (39.02%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLK 490
            K+DI +  AL ++   +T+QLDF LP+RF+L Y   D  +  RPVMIHR ++ ++ER  AIL+E+YKG +P WL+P Q  + PVS EK   YA +V   +   G   DVD  + K+Q K+R +Q ++  + L+VG++E +   V+VR   Q +   +S+++ ++
Sbjct:  471 KLDIQIKTALGKEETLSTIQLDFLLPERFDLKYIGAD-GEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTLIPVSNEKHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYGQKETQTVSVDNFVQ 633          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_STRR6 (Threonyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=thrS PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 64/164 (39.02%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLK 490
            K+DI +  AL ++   +T+QLDF LP+RF+L Y   D  +  RPVMIHR ++ ++ER  AIL+E+YKG +P WL+P Q  + PVS EK   YA +V   +   G   DVD  + K+Q K+R +Q ++  + L+VG++E +   V+VR   Q +   +S+++ ++
Sbjct:  471 KLDIQIKTALGKEETLSTIQLDFLLPERFDLKYIGAD-GEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTLIPVSNEKHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYGQKETQTVSVDNFVQ 633          
The following BLAST results are available for this feature:
BLAST of CF417356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_RHIE62.577e-2737.74Threonyl-tRNA synthetase OS=Rhizobium etli (strain... [more]
SYT_PHEZH2.577e-2741.78Threonyl-tRNA synthetase OS=Phenylobacterium zucin... [more]
SYT_LACGA2.577e-2736.99Threonyl-tRNA synthetase OS=Lactobacillus gasseri ... [more]
SYT_DELAS2.577e-2738.32Threonyl-tRNA synthetase OS=Delftia acidovorans (s... [more]
SYT_TREPS3.365e-2739.10Threonyl-tRNA synthetase OS=Treponema pallidum sub... [more]
SYT_TREPA3.365e-2739.10Threonyl-tRNA synthetase OS=Treponema pallidum GN=... [more]
SYT_STRZT3.365e-2739.02Threonyl-tRNA synthetase OS=Streptococcus pneumoni... [more]
SYT_STRZP3.365e-2739.02Threonyl-tRNA synthetase OS=Streptococcus pneumoni... [more]
SYT_STRZJ3.365e-2739.02Threonyl-tRNA synthetase OS=Streptococcus pneumoni... [more]
SYT_STRR63.365e-2739.02Threonyl-tRNA synthetase OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-286 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417356 ID=CF417356; Name=CF417356; organism=Citrus sinensis; type=EST; length=662bp
AAAGATTGATATCAGTGTATCTGATGCATTGAAGAGGAAATTCCAGTGTG
CTACTTTGCAGCTTGACTTTCAGCTTCCTGATCGTTTCAACTTGGGTTAC
TCAGCGGAAGATGAAGCCAAGACAGAGAGACCTGTTATGATACACAGAGC
GATATTGGGGTCTGTTGAACGTATGTTTGCTATACTGTTGGAACATTACA
AGGGGAAGTGGCCTTTTTGGCTCAGTCCACGTCAAGCAATTGTTTGCCCT
GTGTCAGAGAAATCCCAACCATATGCTTTACAGGTGCGGGATCATATTTA
TCGAGCCGGTTATTATGTTGATGTGGATACAACAGACAGAAAGATTCAGA
AAAAGGTACGGGAAGCACAGTTGGCACAGTATAATTTTATATTGGTGGTT
GGTGAAGAGGAAGCCAAAAGTGGACAGGTTAGTGTCCGGGTGAGAGATCA
GGGTGACCATTCAAATATGAGCATCGAGGACCTACTAAAACACTTCAAGG
AAAAACTTGAAGCATTTCAATAGGACGCTTAACCATTGAAGTGGAATGCA
AATTTTCATTAAAACACCTCATAAAGACAAGAAAGAGCTGCTAGAAATTA
TTCACTCGATTATTCCCTACTTGTTTGAAATCAAAATCAGATTTTGATTT
GTAAGGCAGATT
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