CF417356

Overview
NameCF417356
Unique NameCF417356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CLOBJ (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=thrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KID  + D + R +QC T+QLDFQ+P+RF+L Y   D  K  RPVM+HR I GSVER   IL+E Y G +P WL+P Q  +  +++    Y  +V + +      V++DT + KI  K+REAQL +  ++L++G++E ++G+V+VR R  GD   +S+E+ ++  K +++
Sbjct:  463 KIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEK-HRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIK 631          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CLOBH (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KID  + D + R +QC T+QLDFQ+P+RF+L Y   D  K  RPVM+HR I GSVER   IL+E Y G +P WL+P Q  +  +++    Y  +V + +      V++DT + KI  K+REAQL +  ++L++G++E ++G+V+VR R  GD   +S+E+ ++  K +++
Sbjct:  463 KIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEK-HRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIK 631          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CLOB1 (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KID  + D + R +QC T+QLDFQ+P+RF+L Y   D  K  RPVM+HR I GSVER   IL+E Y G +P WL+P Q  +  +++    Y  +V + +      V++DT + KI  K+REAQL +  ++L++G++E ++G+V+VR R  GD   +S+E+ ++  K +++
Sbjct:  463 KIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEK-HRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDSQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIK 631          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CHLTE (Threonyl-tRNA synthetase OS=Chlorobium tepidum GN=thrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 69/168 (41.07%), Postives = 108/168 (64.29%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 505
            KID  V DA+ RK+Q  T+Q+D+ +P+RF+L Y   D  K  RPV+IHRA  GS+ER   +L+EH  G +P WL+P QA+V P++E+   YA +V   ++ AG   ++D    KI KK+REA+L++   +LV+G  E + G+VS+R   +GD  +  +++L+    E+
Sbjct:  486 KIDFIVRDAIGRKWQLGTVQVDYVMPERFDLSYIGSDGQK-HRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIAEEVHDYAREVYAKLHEAGIRTELDLRSEKIGKKIREAELSKIPAMLVIGRNEQEKGEVSLRRHRKGDEGSFGVDELIARLCEE 652          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CHLL2 (Threonyl-tRNA synthetase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=thrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 68/169 (40.24%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 508
            KID  V DAL RK+Q  T+Q+D+ +P+RF+L Y   D  K  RPV+IHRA  GS+ER   +L+EH  G +P WL+P QA+V P++E+   YA  +   +  AG  V++DT + KI +K+REA++ +   +++VG++E  SG++S+R    GD  + ++  L+   K+++
Sbjct:  486 KIDFIVRDALGRKWQLGTVQVDYVMPERFDLSYIGSDGQK-HRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIAEEVHDYAKTIHTALLAAGIRVEIDTRNEKIGRKIREAEIGKIPCMIIVGQKERDSGEISLRRHRSGDMGSFTVPGLIDILKKEI 653          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CLOBM (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=thrS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.411e-33
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KID  + D + R +QC T+QLDFQ+P+RF+L Y   D  K  RPVM+HR I GSVER   IL+E Y G +P WL+P Q  +  +++    Y  +V + +      V++DT + KI  K+REAQL +  ++L++G++E ++G+V+VR R  GD   +S+E+ ++  K +++
Sbjct:  463 KIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEK-HRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKIPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIK 631          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_CLOB6 (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=thrS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.411e-33
Identity = 68/170 (40.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KID  + D + R +QC T+QLDFQ+P+RF+L Y   D  K  RPVM+HR I GSVER   IL+E Y G +P WL+P Q  +  +++    Y  +V + +      V++DT + KI  K+REAQL +  ++L++G++E ++G+V+VR R  GD   +S+E+ ++  K +++
Sbjct:  463 KIDFHLKDCIGRTWQCGTIQLDFQMPERFDLSYIGADGEK-HRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNITDAQYDYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKDGDLGAISLEEFIEKIKNEIK 631          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_THEFY (Threonyl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=thrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 71/172 (41.28%), Postives = 108/172 (62.79%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNM----SIEDLLKHFKEK 505
            KI +   DA+ R +Q +T+Q+DFQ P RF L Y A D ++ +RPVMIHRA+ GS+ER FA+LLEHY G +P WL+P Q +  P++ +  PY   V   +   G  V+VD +D ++QKK+R AQ  +  F+L+ G+ +   G VS R RD   ++ +    +IE++L   +E+
Sbjct:  486 KISVQAKDAIGRTWQMSTIQVDFQQPKRFELEYQAADGSR-QRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVVGIPIASEHVPYLEDVARRLREHGVRVEVDASDDRMQKKIRNAQKQKIPFMLLAGDNDVSKGAVSFRYRDGSQNNGVPIDKAIEEILTVIRER 656          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_PARD8 (Threonyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=thrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 69/158 (43.67%), Postives = 103/158 (65.19%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSI 475
            K+D  V DA+ R++Q  T+Q+D+ LP+RF L Y+  D  K  RPVMIHRA  GS+ER  A+L+EH  GK+P WL+P Q  + P+SEK   YA Q+   +        VD  + KI +K+R+ +L +  ++L+VGE+EA++ +VSVR + +GD  +M I
Sbjct:  472 KLDFMVKDAIGRRWQLGTIQVDYNLPERFQLEYTGADNQK-HRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVCIMPISEKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENSEVSVRKQGEGDKGSMKI 628          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYT_FRASN (Threonyl-tRNA synthetase OS=Frankia sp. (strain EAN1pec) GN=thrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 68/170 (40.00%), Postives = 108/170 (63.53%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KI +   DA+ R +Q +T+Q+DFQLP RF++ Y A D  + +RP MIHRA+ G++ER FAILLEHY G  P WL+P Q +  P++++  PY   V   + + G  V+VD++D ++QKK+R AQ  +  F+L+ G+E+   G VS R RD    + + +++ +    + +E
Sbjct:  485 KISVQARDAIGRTWQLSTIQVDFQLPQRFDMTYQAADGTR-QRPFMIHRALFGTIERFFAILLEHYAGALPPWLAPVQVVGIPITDEHVPYLTDVAAKLRQRGIRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVAKGAVSFRFRDGTQRNGVPVDEAVAEILDAVE 653          
The following BLAST results are available for this feature:
BLAST of CF417356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CLOBJ1.080e-3340.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOBH1.080e-3340.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOB11.080e-3340.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CHLTE1.080e-3341.07Threonyl-tRNA synthetase OS=Chlorobium tepidum GN=... [more]
SYT_CHLL21.080e-3340.24Threonyl-tRNA synthetase OS=Chlorobium limicola (s... [more]
SYT_CLOBM1.411e-3340.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOB61.411e-3340.00Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_THEFY1.842e-3341.28Threonyl-tRNA synthetase OS=Thermobifida fusca (st... [more]
SYT_PARD81.842e-3343.67Threonyl-tRNA synthetase OS=Parabacteroides distas... [more]
SYT_FRASN1.842e-3340.00Threonyl-tRNA synthetase OS=Frankia sp. (strain EA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-286 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417356 ID=CF417356; Name=CF417356; organism=Citrus sinensis; type=EST; length=662bp
AAAGATTGATATCAGTGTATCTGATGCATTGAAGAGGAAATTCCAGTGTG
CTACTTTGCAGCTTGACTTTCAGCTTCCTGATCGTTTCAACTTGGGTTAC
TCAGCGGAAGATGAAGCCAAGACAGAGAGACCTGTTATGATACACAGAGC
GATATTGGGGTCTGTTGAACGTATGTTTGCTATACTGTTGGAACATTACA
AGGGGAAGTGGCCTTTTTGGCTCAGTCCACGTCAAGCAATTGTTTGCCCT
GTGTCAGAGAAATCCCAACCATATGCTTTACAGGTGCGGGATCATATTTA
TCGAGCCGGTTATTATGTTGATGTGGATACAACAGACAGAAAGATTCAGA
AAAAGGTACGGGAAGCACAGTTGGCACAGTATAATTTTATATTGGTGGTT
GGTGAAGAGGAAGCCAAAAGTGGACAGGTTAGTGTCCGGGTGAGAGATCA
GGGTGACCATTCAAATATGAGCATCGAGGACCTACTAAAACACTTCAAGG
AAAAACTTGAAGCATTTCAATAGGACGCTTAACCATTGAAGTGGAATGCA
AATTTTCATTAAAACACCTCATAAAGACAAGAAAGAGCTGCTAGAAATTA
TTCACTCGATTATTCCCTACTTGTTTGAAATCAAAATCAGATTTTGATTT
GTAAGGCAGATT
back to top