CF417371

Overview
NameCF417371
Unique NameCF417371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.661e-48
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 502
            KDY +PPPAP  +  EL  WSFYRA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAICG G+VK F
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGF 153          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.661e-48
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 508
            KDY +PPPAPL +  ELK WSFYRA IAEFVAT LFLY+++ TV+G  K +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+CG G+VK F +
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQ 158          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.475e-48
Identity = 90/125 (72.00%), Postives = 103/125 (82.40%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 502
            KDY +PPPAPL +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAICG G+VK F
Sbjct:   29 KDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGF 153          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 4.539e-48
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 2
Query:  134 YVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQS---DACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 508
            Y DPPPAPL+D +EL  WS YRALIAEF+ATL+FLYVS+ATVIG+K Q    DAC GVG LG+AW+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SL+R V Y+VAQCLGAI G G+VK  MK
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMK 150          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 90/125 (72.00%), Postives = 103/125 (82.40%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 502
            KDY +PPPAPL + +EL  WSFYRA IAEF+AT LFLY++V TV+G  ++S  C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV Q LGAICG G+VK F
Sbjct:   32 KDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGF 156          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 89/127 (70.08%), Postives = 102/127 (80.31%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 508
            KDY +PP AP+ ++ EL  WSFYRA IAEFVAT LFLY+S+ TV+G  K +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM  QCLGAICG G+VK F +
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQR 157          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 502
            KDY +PPPAP  +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAICG G+VK F
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGF 153          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF 502
            KDY +PPPAP  +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAICG G+VK F
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGF 153          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.108e-45
Identity = 88/127 (69.29%), Postives = 101/127 (79.53%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 508
            KDY +PPPAPL +  ELK WSFYR  IAEFVAT LFLY+S+ TV+G  K +  C  VG+ GIAW+FGGMI  LVYCTAGIS GHINPAVTFGLFLARK+SL RAV Y++ QCLGAICG G+VK F +
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQ 156          
BLAST of CF417371 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.754e-45
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 2
Query:  128 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKA 499
            KDY DPPPAPL+D  EL  WS YRA IAEF ATLL + +SV+TVIG K+QS   GG G+LGIAWAFGG+IFVLVYCTAGISGGH+NPAVTF + LAR+VSL RA  Y +AQC+GA+CG GL +A
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARA 134          
The following BLAST results are available for this feature:
BLAST of CF417371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PIP13_ARATH2.661e-4872.00Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_MAIZE2.661e-4869.29Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP12_ARATH3.475e-4872.00Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP27_ORYSJ4.539e-4871.09Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP2_PEA1.725e-4772.00Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP13_ORYSJ1.725e-4770.08Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_VICFA1.725e-4770.40Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH1.725e-4770.40Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP11_MAIZE2.108e-4569.29Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP28_ORYSJ2.754e-4570.16Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-301 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417371 ID=CF417371; Name=CF417371; organism=Citrus sinensis; type=EST; length=516bp
TTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAA
GGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACC
AGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAG
CTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTT
GCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGG
CCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTT
ACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTT
GGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACAT
GGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCT
TCATGAAGCATGAGTA
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