CF417373

Overview
NameCF417373
Unique NameCF417373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   49 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFK--AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDST 279
            + TV ++ VV+FSK+ CP+C   K +F++L +  +   +ELD+  DG +IQ AL++  G++TVP VF+ GKH+GG D T
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDT 115          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.060e-14
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   49 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 291
            Q  + SN + +FSKT CP+ +  K +F+ L      +ELD   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAH 115          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   25 TEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREREAGS 312
            T +A    ++ +S+N V VFSK+ CPFC + K    +    +KA ELDK  +GSDIQ+ L E T Q TVP++F   + IGG    + L++ R +G+
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGG---NSDLNKLRSSGT 94          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   49 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 267
            ++ +    V V +KT CP+C  ++  LFQ+L V       +ELD+ S+GS+IQ AL E +GQKTVPNV+I GKHIGG
Sbjct:   45 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGG 121          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   25 TEMALPKAQETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRERE 303
            ++  +   ++ ++ N + V SKT CP+C  ++  LF++L V    +   +L+   +G+DIQ+AL E  GQ+TVPN++I GKHIGG D    L    E
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGE 99          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   58 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREREAGS 312
            V+ N VVVF+K+ CP+C + +++     +  +  ++D  ++G +IQS L + TGQ+TVPN+FI  KH+GG     AL ++ E  S
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDS 96          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 1.206e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   61 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALH 291
            S  +VV+F  + C  C  VK LF +LGV++   E+DK+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLH 87          

HSP 2 Score: 25.0238 bits (53), Expect = 1.206e-11
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  299 GKLVPLLTEAGAV 337
            GKLVPLL EAGA+
Sbjct:   90 GKLVPLLREAGAL 102          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   49 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRER 300
            Q+ +S  SVV+FSK  C    ++K LF  LGV     ELD+ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH  R
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNR 88          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   37 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRER 300
            + K Q+ +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH  R
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNR 88          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   37 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRER 300
            + K Q+  S  S+V+FSK  C    ++K LF  LGV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH  R
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNR 88          
The following BLAST results are available for this feature:
BLAST of CF417373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRXC8_ORYSJ3.109e-1444.30Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ4.060e-1441.98Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX2_SCHPO2.632e-1340.63Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX2_YEAST5.863e-1349.35Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX1_YEAST3.800e-1237.11Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX1_SCHPO3.800e-1238.82Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXC2_ORYSJ1.206e-1143.59Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRXS3_ARATH1.886e-1144.05Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH3.217e-1140.91Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH4.202e-1140.91Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-303 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417373 ID=CF417373; Name=CF417373; organism=Citrus sinensis; type=EST; length=561bp
TTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCA
GGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGCTTTGTC
CGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTC
AAGGCCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGC
TCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAG
GGAAACACATTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAAGG
GAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTG
CCTAAGGGATGGCTATTCTCTGCCTGTTTATGCTAGTAATAAATAAACAA
TGTGTTGGTAGTGCTTAATCTGTCTGAATTAAATATGAAATTATGCTTAT
TTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAA
ATCTGTATGAATTTTATCAGATTTTCCATCTACTATATCCATGTAGAGTC
ATTTCTGCTGT
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