CF417375

Overview
NameCF417375
Unique NameCF417375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417375 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 53/198 (26.77%), Postives = 84/198 (42.42%), Query Frame = 3 
Query:   15 ACAPMLCAGISVYSPLRSHGLDKPXXXXXXXXXXXXXXXAVKFAK-AMGVKVTVISTSPSKKKDAIERLGADTFLFSHDPDEMQSAVST-----LDGIIDTVTGFHXXXXXXXXXXXXXXXVIVGGP-DKLELPVPPLLFGAKAVVGCFVGGMKETQDMLNFAAEHNITADIETISIDNANTALERLEKGDVRYRFVI 587
            A + + CAG++ Y  ++   + KP               A+++AK  MG K+     +  K   A E LGAD  + S D D +   +       LD  + T                    V VG P DK+ L +P L+     VVG  VG  ++ ++   FAAE+ +T  ++   ++  N   E +EKG +  R VI
Sbjct:  139 AASSITCAGVTTYKAVKVSNV-KPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKE-LGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMEKGTITGRMVI 334
The following BLAST results are available for this feature:
BLAST of CF417375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ADH_STAAM8.024e-1126.77Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-305 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417375 ID=CF417375; Name=CF417375; organism=Citrus sinensis; type=EST; length=684bp
GCCTTCCTCTTGATGCCTGTGCCCCAATGCTTTGTGCTGGTATCTCAGTT
TACAGCCCTTTGAGATCACATGGACTTGACAAACCAGGTATGCATGTCGG
TGTAGTTGGCCTGGGTGGATTAGGCCATATGGCTGTCAAGTTTGCTAAAG
CAATGGGGGTTAAGGTAACAGTCATTAGTACCTCCCCTAGTAAGAAGAAG
GATGCCATTGAACGTCTCGGTGCTGACACATTTCTGTTTAGTCATGATCC
GGATGAGATGCAGTCTGCCGTGAGCACCTTGGACGGTATCATTGACACAG
TAACCGGCTTTCACCCTCTATTGCCATTACTTGGACTATTGAAATATAAT
GGCAAGCTTGTTATTGTCGGTGGACCAGATAAGCTAGAGCTACCGGTTCC
TCCTCTACTCTTTGGGGCAAAGGCTGTTGTTGGCTGTTTCGTTGGGGGCA
TGAAGGAGACTCAAGACATGCTCAATTTTGCAGCCGAACACAACATAACG
GCAGACATCGAGACTATATCAATCGATAATGCGAACACTGCCCTGGAGCG
TCTTGAGAAAGGCGATGTCAGATATCGATTTGTCATCGACGTTGGGAACA
CACTGAAGTCTANCTCTTAGATATTTGGCTGGATCGGCTATACTATATGA
TGAAATGTTGAGTCATATATAATTAGTATCCTAT
back to top