CF417381
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19 Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTP-VWRSP 375 +YD+ T +SP GRL+QVEYAMEA+ +AIG+ S+ VVL K S+L S+ K++K+DDH+ A+AG+ +D +L R ++ +++ Y+ P+PV +LV L D Q T W+ P Sbjct: 5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL---SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRP 127
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.415e-19 Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 10 SRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 324 S T++SP+GR++Q+EYAMEA+ + +G+ SK VLV K+ S+L + +K+ +D+H+ ++AG+ +DA +L N R + + + P+PV +LV Sbjct: 7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLV 108 HSP 2 Score: 37.7354 bits (86), Expect = 1.415e-19 Identity = 27/100 (27.00%), Postives = 48/100 (48.00%), Query Frame = 2 Query: 311 LSSLFNLFVIQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLSKTMGQHQ 604 +S L +L ++++ Q G RP+GV L AG+D + G ++ + PS NY K + L++ + D + E V+ L+ L +T+ Q Sbjct: 104 VSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQ 202
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18 Identity = 51/144 (35.42%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426 YD T FSP+GR++QVEYA +A+ N+G+ +GI KDG+VL EK VTSK++ S +++ + H AVAG+ +D +++ A+ +A Y Y EP+ V++L + T W P C + + R G +L++ Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMM-LEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426 YD T FSP+GR++Q+EYA +A+ N+G+A+GI KDG+VL EK + SK++ S +++ + H AVAG+ +D ++ A+ +A Y Y E +PV++L + T W P C + + R G +L++ Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.471e-18 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 25 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 FSP+GRL+Q EYA +A+ NA + IGI +DGV+L EK VTSKLL+ + ++ +D H+ A G + D ++ AR +A + Y P+P + L + Q +T Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFT 123 HSP 2 Score: 33.4982 bits (75), Expect = 9.471e-18 Identity = 21/76 (27.63%), Postives = 36/76 (47.37%), Query Frame = 2 Query: 362 FGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589 + +RPFGV A +D G LYM +P+G Y G+ + L++ + ++AV+ A ++L T Sbjct: 125 YSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYAT 199
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17 Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426 YD T FSP+GR++Q+EYA +A+ N+G+ +GI KDG+V+ EK + SK++ S +++ + H AVAG+ +D ++ A+ +A+ Y Y + +PV++L + + T W P C + + R G +L++ Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWC 387 +D TIFSPEGRLYQVEYA +AI + + + S D V+ +KKVT K + T T +++I + CA+ G ++D+ + AR +A + Y Y MPV+ L + + D Q YT PL C Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGC 136
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16 Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTP-VWRSP 375 +YD+ T +SP GRL+QVEYAMEA+ + +G+ S+ VL K S+L S+ K++++ DH A+AG+ +D +L R + + + Y P+PV +L L D Q T W+ P Sbjct: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRP 127
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16 Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKL 420 +D T+FSPEGRLYQVEYA +A NAG +++G+ K+ ++ +KKV KL+ ST + ++ I + C + G ++DA ++ AR +A + Y PMP + L + + + Q T PL ++ V ++ Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST-VKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEI 145
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15 Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISF 399 +D TIFSPEGR+YQVEYA +AI + +A+ + D V+ +K+V L+ T T +Y+I V C G++ DA I A+ +A + Y MP E L + + D Q YT L C + F Sbjct: 9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT-SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLF 140 The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bpback to top |