CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTP-VWRSP 375
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ S+  VVL    K  S+L   S+   K++K+DDH+  A+AG+ +D  +L    R ++  +++ Y+ P+PV +LV  L D  Q  T   W+ P
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL---SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRP 127          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.415e-19
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   10 SRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLV 324
            S  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLV 108          

HSP 2 Score: 37.7354 bits (86), Expect = 1.415e-19
Identity = 27/100 (27.00%), Postives = 48/100 (48.00%), Query Frame = 2
Query:  311 LSSLFNLFVIQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLSKTMGQHQ 604
            +S L +L   ++++  Q  G RP+GV  L AG+D + G  ++ + PS NY   K            + L++   +  D +  E V+  L+ L +T+   Q
Sbjct:  104 VSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQ 202          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 51/144 (35.42%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426
            YD   T FSP+GR++QVEYA +A+ N+G+ +GI  KDG+VL  EK VTSK++    S  +++ +  H   AVAG+ +D   +++ A+ +A  Y   Y EP+ V++L   +       T  W   P  C +    + R G +L++
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMM-LEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426
            YD   T FSP+GR++Q+EYA +A+ N+G+A+GI  KDG+VL  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y E +PV++L   +       T  W   P  C +    + R G +L++
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.471e-18
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   25 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            FSP+GRL+Q EYA +A+ NA + IGI  +DGV+L  EK VTSKLL+   +  ++  +D H+  A  G + D   ++  AR +A  +   Y  P+P   +   L +  Q +T
Sbjct:   14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFT 123          

HSP 2 Score: 33.4982 bits (75), Expect = 9.471e-18
Identity = 21/76 (27.63%), Postives = 36/76 (47.37%), Query Frame = 2
Query:  362 FGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            +  +RPFGV    A +D   G  LYM +P+G Y G+             + L++     +  ++AV+ A ++L  T
Sbjct:  125 YSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYAT 199          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFI---SFCRVGQKLWL 426
            YD   T FSP+GR++Q+EYA +A+ N+G+ +GI  KDG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A+ Y   Y + +PV++L + +       T  W   P  C +    + R G +L++
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM 150          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWC 387
            +D   TIFSPEGRLYQVEYA +AI     + + + S D  V+  +KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YT      PL C
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGC 136          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTP-VWRSP 375
            +YD+  T +SP GRL+QVEYAMEA+    + +G+ S+   VL    K  S+L   S+   K++++ DH   A+AG+ +D  +L    R +   + + Y  P+PV +L   L D  Q  T   W+ P
Sbjct:    5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRP 127          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKL 420
            +D   T+FSPEGRLYQVEYA +A  NAG +++G+  K+   ++ +KKV  KL+  ST  + ++ I   + C + G ++DA   ++ AR +A  + Y    PMP + L + + +  Q  T      PL   ++   V  ++
Sbjct:    7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST-VKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEI 145          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISF 399
            +D   TIFSPEGR+YQVEYA +AI +   +A+ +   D  V+  +K+V   L+   T T  +Y+I   V C   G++ DA   I  A+ +A  + Y     MP E L + + D  Q YT       L C + F
Sbjct:    9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT-SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLF 140          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1A_ARATH1.235e-1939.68Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1_CHICK1.415e-1935.24Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA3_ORYSJ1.046e-1835.42Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_SPIOL3.042e-1834.03Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_SCHPO9.471e-1837.84Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA3_ARATH1.156e-1731.94Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA6_DROME4.393e-1737.98Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA1_ORYSJ2.180e-1634.92Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA6_SCHPO3.719e-1632.86Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA6_CAEEL3.148e-1535.34Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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