CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKL 420
            YD   TIFSPEGRLYQVEYA +A      +++ +  KD  V++ +KKV  KLL   T+   ++ I   +   V G + DA      A+ +A  + Y Y   MP + L + + +  Q YT      PL   ++F  V ++L
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLD-PTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEEL 150          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD  T  FSP GRL+QVEYA+EAI      +G+ S    VLV  K+   +L   S+  +K+ K D+H+  ++AG+  DA +L N  R Q    +  +   + VE+    LCD  Q  T  +   P
Sbjct:    6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRP 127          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 48/150 (32.00%), Postives = 73/150 (48.67%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQK----LWLPTLH 438
            +D   T+FSPEG LYQVEYA +A+  AG   + I  KD V++  +  V  KL++  T T  +Y ++D+    + G   D   L+  AR +A  Y Y Y  PM V  L +   D  Q  T       +   ++F  + Q      W+P ++
Sbjct:    6 FDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIY 154          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   22 IFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPL 381
            IFSP+G+LYQ+EYA +AI   G +++GI  KD VV+  +KK+  KL+   + T  +YK+ D++ C   GI+ D+    + A  +   + + +   +P   L + + D  Q  T    + PL
Sbjct:   14 IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVT-SLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPL 133          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.045e-12
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   88 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE 315
            + +GI  KDGVV   E++ +   L    +T+K++KID+H+A  +AG ++DA  L+   + +A  Y     E + +E
Sbjct:   11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIE 86          

HSP 2 Score: 36.965 bits (84), Expect = 6.045e-12
Identity = 22/72 (30.56%), Postives = 34/72 (47.22%), Query Frame = 2
Query:  377 PFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            PF V  L  G D+N G ++Y  DPSG     K             +L+  Y D++  +EAV +A++ +   M
Sbjct:  103 PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAM 173          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   13 RTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            ++  F+ EGRL QVE+A++ +  AG+ IG +  DGVVL+G  K       T+   EK+Y++ D + C + G+  DA  L   AR++AQ     +    P+  L + +   KQ +T
Sbjct:    7 KSNTFTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKE-----PTNGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFT 116          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_YEAST2.041e-1434.29Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA1_YEAST2.665e-1436.00Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA1_TRYBB1.323e-1332.00Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA6_DICDI3.258e-1233.06Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSMB_METTH6.045e-1232.89Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA4_ENCCU9.479e-1233.91Probable proteasome subunit alpha type-4 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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