CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.208e-37
Identity = 59/118 (50.00%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +AIGI  K+GV+L+ +K+V SKLL+  T  EK+YKID+H+  A +G+++DA +LI+ AR++AQ     Y EP+ V++L + +CD KQ YT
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADT-IEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYT 124

HSP 2 Score: 48.9062 bits (115), Expect = 4.208e-37
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLAL 571
            Q+GG+RPFGVS L AG D+    +LY +DPSG    +K               +++Y+DD+S ++A+ L L
Sbjct:  125 QYGGVRPFGVSLLIAGVDEVP--KLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGL 193
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.477e-37
Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YT
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYT 126

HSP 2 Score: 49.6766 bits (117), Expect = 5.477e-37
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +D++  E ++LAL  LSKT
Sbjct:  127 QHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKT 202
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.577e-36
Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YT
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYT 126

HSP 2 Score: 47.3654 bits (111), Expect = 1.577e-36
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT
Sbjct:  127 QHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKT 202
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.677e-36
Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YT
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYT 126

HSP 2 Score: 47.3654 bits (111), Expect = 2.677e-36
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT
Sbjct:  127 QHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKT 202
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
[Close]
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.491e-36
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYT 126

HSP 2 Score: 61.2326 bits (147), Expect = 3.491e-36
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+
Sbjct:  127 QHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATL 203
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_ARCFU4.208e-3750.00Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_METM55.477e-3751.69Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMP1.577e-3651.69Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM72.677e-3651.69Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULIY3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA3.491e-3648.31Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
back to top