CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.170e-33
Identity = 55/118 (46.61%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++ + S EK+++ID+H+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YT
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVE-AESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYT 123          

HSP 2 Score: 46.9802 bits (110), Expect = 1.170e-33
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K
Sbjct:  124 QYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYK 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.583e-33
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSPEG LYQV YA EA+    +++GI + +GVV+  EK+    L+      +K+YKIDDH+  A AG+  D  ILI+ ARV   R+   Y EP PVE + + + D KQ YT
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDID-DIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYT 128          

HSP 2 Score: 58.5362 bits (140), Expect = 2.583e-33
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            Q GG+RPFGV+ +FAG + +   ++Y +DP G Y  +K             + ++ Y+ D+S EEA +LALK+L
Sbjct:  129 QHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKIL 202          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.367e-33
Identity = 56/118 (47.46%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++ + S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YT
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVE-AESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYT 125          

HSP 2 Score: 43.8986 bits (102), Expect = 3.367e-33
Identity = 22/74 (29.73%), Postives = 39/74 (52.70%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            Q+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + +Y+ D++ + A+ L +  L
Sbjct:  126 QYGGVRPYGTALLIAGVDDNLP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDAL 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.388e-33
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K+ VV++GEKK  S+LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR  + ++   Y EP+ ++ L + + D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVD-SIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYT 126          

HSP 2 Score: 53.1434 bits (126), Expect = 4.388e-33
Identity = 27/78 (34.62%), Postives = 45/78 (57.69%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ +  G D+    +L+M++PSG +  ++              L+++YK+D+S EE + LAL  L  T+
Sbjct:  127 QHGGVRPFGVALIVGGVDRGVT-KLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTL 203          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.711e-33
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T+KL Q + S  K+  +DDH+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKL-QDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 53.5286 bits (127), Expect = 5.711e-33
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D   G   LY +DPSG +  WK              L++++K + S +E V+LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFK-ETSGQETVKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.439e-33
Identity = 55/118 (46.61%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++ + S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YT
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVE-AESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYT 123          

HSP 2 Score: 46.2098 bits (108), Expect = 7.439e-33
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K
Sbjct:  124 QYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYK 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.441e-33
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K GVVL+ EK+  ++LL      EK++ +DDHV C  AG+ SD  ILI+ AR QA ++   Y EP+ +E L + + D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVD-GIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYT 126          

HSP 2 Score: 50.447 bits (119), Expect = 7.441e-33
Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ +  G DK    +L M++PSG +  +               L+++YK+D+  +  + LAL+ L  T+
Sbjct:  127 QHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATL 204          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.687e-33
Identity = 55/118 (46.61%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++ + S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YT
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVE-AESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYT 125          

HSP 2 Score: 46.2098 bits (108), Expect = 9.687e-33
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K
Sbjct:  126 QYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYK 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.262e-32
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRLYQVEYA EA+    +A+GI   DG+VL+ +K+V SKLL+ S S EK++KID+H+  A +G++ DA  L++ ARV++Q    +Y E + VE L + LCD  Q YT
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPS-SIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYT 125          

HSP 2 Score: 45.0542 bits (105), Expect = 1.262e-32
Identity = 24/74 (32.43%), Postives = 37/74 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            QFGG RP+G + L AG      F+L+ +DPSG    +K             + +++Y  + S  +A+ L LK L
Sbjct:  126 QFGGARPYGTALLIAGISDGQ-FRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKAL 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.787e-32
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T K LQ S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPK-LQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 52.7582 bits (125), Expect = 2.787e-32
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK+  S +E ++LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-SGQETIKLAIRAL 194          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METAC1.170e-3346.61Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_AERPE2.583e-3345.76Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSMA_METBF3.367e-3347.46Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METS54.388e-3344.92Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA7_CICAR5.711e-3344.54Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSMA_METTE7.439e-3346.61Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_SULAC7.441e-3345.76Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METMA9.687e-3346.61Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METPE1.262e-3249.15Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSA7B_ARATH2.787e-3243.70Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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