CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.089e-31
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVLV +K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARP 133          

HSP 2 Score: 46.595 bits (109), Expect = 5.089e-31
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG RPFGV+ L AG +     +L+ +DPSG    WK              L+ +Y   +S ++ + LAL+ L++
Sbjct:  127 QVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.089e-31
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA EA+    +A+GI  KD VVL  EKK  +K LQ   +  K+  +D+HV  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAK-LQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYT 121          

HSP 2 Score: 52.7582 bits (125), Expect = 5.089e-31
Identity = 28/76 (36.84%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+   S  +A++LA+K L
Sbjct:  122 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKAL 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.091e-31
Identity = 55/118 (46.61%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    ++IGI   +G+VL  +K+ TS L++ +TS EK++KID+H+  A +G+++DA  L+  ARV+AQ     Y EP+ V+ L + LCD  Q YT
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVE-ATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYT 125          

HSP 2 Score: 41.5874 bits (96), Expect = 5.091e-31
Identity = 24/76 (31.58%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFG + +  G       +L+ +DPSG    +K             I +  YKDD++  EA+ LAL  +++
Sbjct:  126 QNGGVRPFGSALIIGGVYDGI-CKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINE 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.091e-31
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    +++GI + DG+VL  +K+  S L++  TS EK++K DDHV  A AG ++DA  LI+ AR QAQ     Y EP+ +E L +++ D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLME-PTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARP 133          

HSP 2 Score: 47.3654 bits (111), Expect = 5.091e-31
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLS 583
            Q GG RPFGV+ L  G +     +LY +DPSG    WK              L+++Y +++S +E V LAL+ ++
Sbjct:  127 QVGGARPFGVALLIGGIEDGSP-RLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIA 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.124e-30
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    ++IGI ++DGVVLV +K++ S L++  TS EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L +++ D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLME-RTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARP 133          

HSP 2 Score: 42.3578 bits (98), Expect = 1.124e-30
Identity = 23/75 (30.67%), Postives = 36/75 (48.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLS 583
            Q GG RPFGV+ +  G +     +LY +DPSG    W+              L++ Y + +  E  + LAL+ L+
Sbjct:  127 QVGGARPFGVALIIGGIEDGEP-RLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALA 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.466e-30
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+E+A++A  + GSAIGI +K+GVVL+ EKK+ S  L   TS +K+  I +++    AG+  D+ +LI  AR ++++Y   Y+E +PV QLV+ L    Q +T
Sbjct:    5 YSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS--LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFT 120          

HSP 2 Score: 62.003 bits (149), Expect = 1.466e-30
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLAL 571
            Q GG+RPFGVS L AG+D+  G  LY  DPSG+Y  WK            + L++ Y DD+  E+A+Q AL
Sbjct:  121 QSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTAL 190          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.906e-30
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA EA+    +A+GI   + VVL  EKK  +KL Q   +  K+  +DDHV  A AG+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKL-QDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYT 121          

HSP 2 Score: 53.9138 bits (128), Expect = 1.906e-30
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y +D   S  EA++LA+K L
Sbjct:  122 QSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKAL 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.482e-30
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T K LQ S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPK-LQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 50.8322 bits (120), Expect = 2.482e-30
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK + S +E ++LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.482e-30
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T K LQ S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPK-LQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 50.8322 bits (120), Expect = 2.482e-30
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK + S +E ++LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.204e-30
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD 339
            YD   + FSPEGRL+QVEY++EAI    +AIGI +K+GVVL  EK+ TS LL+ S S EK+ +ID H+ CA++G+ +DA  +I  AR  A  +   Y E + VE L QS+CD
Sbjct:    8 YDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCD 118          

HSP 2 Score: 45.8246 bits (107), Expect = 4.204e-30
Identity = 23/73 (31.51%), Postives = 39/73 (53.42%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ L AG D + G+QL+ ++PSG +  +             + L  ++   ++ +EA  L LK+L + M
Sbjct:  136 RPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVM 208          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_HALS35.089e-3148.80Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSA7_CARAU5.089e-3144.54Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_METS35.091e-3146.61Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_HALWD5.091e-3147.20Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_NATPD1.124e-3049.60Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA2_DICDI1.466e-3041.53Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA7L_MACFA1.906e-3042.86Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7B_ORYSJ2.482e-3043.70Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI2.482e-3043.70Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA5_YEAST4.204e-3050.00Proteasome component PUP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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