CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.210e-29
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA EA+    +A+GI   + VVL  EKK  +KL Q   +  K+  +DDHV  A AG+ +DA ++I+ ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKL-QDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYT 121          

HSP 2 Score: 53.1434 bits (126), Expect = 1.210e-29
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDI--SREEAVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y +D   + +EA++LA+K L
Sbjct:  122 QSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKAL 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.211e-29
Identity = 47/118 (39.83%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKS-ILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYT 122          

HSP 2 Score: 62.7734 bits (151), Expect = 1.211e-29
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L AGWD++  + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLIAGWDEDRPY-LFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.577e-29
Identity = 47/118 (39.83%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKS-ILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122          

HSP 2 Score: 62.3882 bits (150), Expect = 1.577e-29
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L AGWD+   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLIAGWDEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.049e-29
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + DGVVL  +K++ S L++ S S EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L + + D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERS-SVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARP 133          

HSP 2 Score: 41.5874 bits (96), Expect = 2.049e-29
Identity = 25/75 (33.33%), Postives = 36/75 (48.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLS 583
            Q GG RPFGV+ +  G   N   +L+ +DPSG    WK              L++ Y + +  +E V LAL  L+
Sbjct:  127 QVGGARPFGVALIIGGI-VNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALA 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.477e-29
Identity = 48/112 (42.86%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD 339
            YD     FSPEGR++Q+EYA+EAI    +++GI + D V++  EK+V S L+  S S  K+ +ID H+   ++G+++DA IL++ ARV+AQ + + Y EPM VE    + CD
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPS-SVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCD 118          

HSP 2 Score: 47.3654 bits (111), Expect = 3.477e-29
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGVS L AG D+N G QL+ +DPSG Y  +             ++  + Y  +++ EEA  L +++L + M
Sbjct:  135 RPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVM 206          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 63/138 (45.65%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQK 417
            YD   T+FSP+GRL+QV+YA EA+    +A+G+  KDGVVL  EK+VTSKL++   S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +T      P    +    V +K
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK 146          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.527e-29
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 49.2914 bits (116), Expect = 4.527e-29
Identity = 26/76 (34.21%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y DD    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKLWLPTLHE 441
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K+GVVL  EK++TSKL++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +T      P    +    V  K   P L+E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK---PELYE 151          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQK 417
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +T      P    +    V +K
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK 146          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQK 417
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +T      P    +    V +K
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK 146          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA7L_MOUSE1.210e-2942.02Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA2_CARAU1.211e-2939.83Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_XENLA1.577e-2939.83Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSMA1_HALMA2.049e-2948.00Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA5_TRYBB3.477e-2942.86Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_THESM3.830e-2945.65Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSA7_MOUSE4.527e-2943.22Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSMA_THEON5.003e-2944.52Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEK15.003e-2945.65Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO5.003e-2945.65Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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