CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.684e-29
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 7.684e-29
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.684e-29
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 7.684e-29
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.684e-29
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 7.684e-29
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.684e-29
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YT
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 7.684e-29
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++
Sbjct:  123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 9.985e-29
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVA------GIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA EA+    +A+GI   + VVL  EKK  +K LQ   +  K+  +DDHV  A A      G+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAK-LQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYT 127          

HSP 2 Score: 54.6842 bits (130), Expect = 9.985e-29
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y +D   S  EA++LA+K L
Sbjct:  128 QSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKAL 203          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.301e-28
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 47.7506 bits (112), Expect = 1.301e-28
Identity = 25/76 (32.89%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKLWLPTLHE 441
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K GVVL  EK++TS+L++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +T      P    +    V +K   P L+E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK---PELYE 151          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ ARV+AQ    +Y E + VE L + +CD KQ YT
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYT 126          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.207e-28
Identity = 53/110 (48.18%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSL 333
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAV 116          

HSP 2 Score: 40.0466 bits (92), Expect = 2.207e-28
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y   ++ +EA++ +L +L + M
Sbjct:  135 RPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVM 206          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 2.207e-28
Identity = 53/110 (48.18%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSL 333
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAV 116          

HSP 2 Score: 40.0466 bits (92), Expect = 2.207e-28
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y   ++ +EA++ +L +L + M
Sbjct:  135 RPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVM 206          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_RAT7.684e-2939.83Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE7.684e-2939.83Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN7.684e-2939.83Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN7.684e-2939.83Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA7L_HUMAN9.985e-2940.80Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA7_BOVIN1.301e-2843.22Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSMA_THEGJ1.456e-2843.84Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METVS1.456e-2852.54Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSA5_MOUSE2.207e-2848.18Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN2.207e-2848.18Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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