CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.207e-28
Identity = 53/110 (48.18%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSL 333
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAV 116          

HSP 2 Score: 40.0466 bits (92), Expect = 2.207e-28
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y   ++ +EA++ +L +L + M
Sbjct:  135 RPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVM 206          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.208e-28
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RY    T FSP G+L Q+EYA+ A+     ++GI++ +GVV+  E K  S L +   S  ++  I +H+    +G+  D  +L+  AR  AQ Y   Y+EP+PV QLVQ +    Q YT
Sbjct:    5 RYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYE-QHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYT 122          

HSP 2 Score: 61.2326 bits (147), Expect = 2.208e-28
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L  GWD +  + LY SDPSG Y  WK            + L++ Y +D+  ++AV  A+  L +
Sbjct:  123 QSGGVRPFGVSLLICGWDNDRPY-LYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKE 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 66/146 (45.21%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISF------CRVGQKLW 423
            +DSRTTIFSPEGRLYQVEYAMEA   +G+ +G+L+K+GV+L  E+ V  KL+ TS    ++  +++++AC   G  +D N+L+N  R+ AQ+Y + + E +P EQLV +LCD KQ YT      P    +SF      CR G +L+
Sbjct:    5 FDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSV-DKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFG--VSFLYMGWDCRFGFQLY 147          

HSP 2 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  326 NLFVIQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLSKTMGQ 598
            NL  I+   T Q+GG RPFGVSFL+ GWD  +GFQLY SDPSGNY GWK             +L+++         S EEA  +A+KV+  T+G+
Sbjct:  112 NLCDIKQAYT-QYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMGMTLGR 205          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.870e-28
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 47.7506 bits (112), Expect = 2.870e-28
Identity = 25/76 (32.89%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKLWLPTLHE 441
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +T      P    +    V  K   P L+E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK---PELYE 151          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.343e-28
Identity = 42/119 (35.29%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S +L   TS +K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +T
Sbjct:    5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPS-ILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFT 122          

HSP 2 Score: 61.6178 bits (148), Expect = 6.343e-28
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK            + L++ Y +D+  ++A+  A+  L +
Sbjct:  123 QSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKE 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.343e-28
Identity = 42/119 (35.29%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S +L   TS +K+  +  ++    +G+  D  +L+  +R QAQ+Y   Y+E +PV QLV+      Q +T
Sbjct:    5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPS-ILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFT 122          

HSP 2 Score: 61.6178 bits (148), Expect = 6.343e-28
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L AG+D N G QLY  DPSG+Y  WK            + L++ Y +D+  ++A+  A+  L +
Sbjct:  123 QSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKE 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.074e-27
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSL 333
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GVVL  EK++TS L+  ST  EK+ ++D H+ CA +G+M+DA  LI  ARV+ Q + + Y E M +E   Q++
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPST-VEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAV 116          

HSP 2 Score: 37.3502 bits (85), Expect = 1.074e-27
Identity = 22/73 (30.14%), Postives = 36/73 (49.32%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ LFAG +     QL+  DPSG +                  L+  ++ D++ +EA+ ++L  L + M
Sbjct:  137 RPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVM 208          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.398e-27
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD  T++FSP+GR+YQVEYA EA+      +G+ + DGVVL   +   S+L++ + S EK++K+DD +  A AG ++DA  L++ AR  AQR    Y EP+ VE L +++ D  Q  T
Sbjct:    9 YDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELME-AESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQEST 125          

HSP 2 Score: 47.3654 bits (111), Expect = 1.398e-27
Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            Q GG RP+G S L  G +   G +L+ +DPSG    WK            + L+  Y +D+S E+ + LA++ L
Sbjct:  126 QSGGTRPYGASLLIGGVENGSG-RLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEAL 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-27
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EAI    +A+G+  +D VVL  EKK  +K LQ   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++ + VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 47.7506 bits (112), Expect = 1.819e-27
Identity = 25/76 (32.89%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL 195          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_BOVIN2.207e-2848.18Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA2_DROME2.208e-2837.82Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA4L_DROME2.483e-2845.21Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSA7_HUMAN2.870e-2842.37Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSMA_PYRAB4.235e-2843.15Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA2_ORYSJ6.343e-2835.29Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI6.343e-2835.29Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA5_DROME1.074e-2748.18Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSMA2_HALVO1.398e-2742.37Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7_PONAB1.819e-2742.37Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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