CF417441

Overview
NameCF417441
Unique NameCF417441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 70/225 (31.11%), Postives = 109/225 (48.44%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK +                               +D + K+F+ A++FG TD +N +++D+PI++V+ ++   G+D + EC GN++ M +A E  H G G  +         + S     +   +        G   R  + P  +      +  LE F+TH +   EIN AF+ M
Sbjct:  134 HYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQL-PGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLM 357          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 70/225 (31.11%), Postives = 109/225 (48.44%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK +                               +D + K+F+ A++FG TD +N +++D+PI++V+ ++   G+D + EC GN++ M +A E  H G G  +         + S     +   +        G   R  + P  +      +  LE F+TH +   EIN AF+ M
Sbjct:  134 HYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQL-PGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLM 357          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 79/232 (34.05%), Postives = 105/232 (45.26%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSE---HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNR----GLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFE 677
            + HF+G STFSEYTVV    V  I+P APLD  C+L CGV+TG GA L  A  ++                              +D ++K+ +   +FG TDFVN  E    D+ I E + EMT+GG+D + +CTGN   M  A E  H G G  +         + S     +   +        G   R    GLI              +E+FITHR PF EIN+AFE
Sbjct:  142 IYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQ-----KGALKVEEFITHRRPFKEINQAFE 368          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 79/236 (33.47%), Postives = 113/236 (47.88%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            V HF GTSTFS+YTVV    +AKI+  A L++VC+L CG STG GA +N AK                                 +D +S++F +AK  G TD +N  +  +PIQEVI E+T GGVD +++C G  + M +A +C   G G   C+            + S  LT  P +EL  G T  G            P  +       + L+  +TH +PF +I++AF+ M
Sbjct:  143 VYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWG--SCTF-------IGVAAGSKGLTVFP-EELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLM 368          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 70/227 (30.84%), Postives = 109/227 (48.02%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HF  TSTF EYTV+    VAKI+ +APL+KVC++SCG STG GA +N AK                                 VD + ++F++A++ G T+ +N  +  +PIQEV+ +MT+ G+D   E  GN+D + +A    ++  GV +     P  +Q     Q  +  +     +  G  +R  I P  +         L+  ITH +   +IN+A E M
Sbjct:  138 IYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGSSVVMGCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGLLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHI-PKLVADYMAKKLNLDPLITHTLNLDKINEAVELM 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 70/227 (30.84%), Postives = 109/227 (48.02%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HF  TSTF EYTV+    VAKI+ +APL+KVC++SCG STG GA +N AK                                 VD + ++F++A++ G T+ +N  +  +PIQEV+ +MT+ G+D   E  GN+D + +A    ++  GV +     P  +Q     Q  +  +     +  G  +R  I P  +         L+  ITH +   +IN+A E M
Sbjct:  138 IYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHI-PKLVADYMAEKLNLDPLITHTLNLDKINEAVELM 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 70/228 (30.70%), Postives = 105/228 (46.05%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSE---HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            HF+GTSTFS+YTV+       +   APLDKVC+L CG++TG GA    AK E                               +D +  +F   K FG T+F+N S+     + IQ+ + ++T+GGVD S EC GN++ M +A EC H G GV       P   + S     +   +        G  +R  + P  +         +++++T   P +EIN AF+ M
Sbjct:  141 HFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGITTGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKDFGCTEFINPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAFGGVKSRSQL-PSIIDKYMDKKLKVDEYVTFTYPLNEINTAFDVM 367          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 80/225 (35.56%), Postives = 104/225 (46.22%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVN-TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAF 674
            ++HFL  S+FSEYTVV    + KI+P  P+DK  +LSCGVSTG+GA   VA  E                               +D +S +FE  KKFG TDF+N T   ++ I EVI EMT GGVD S EC G    +  AF     G G  +           S  S  +   +     L  G  ++ L  P+ +         L+ FITH + F EINKAF
Sbjct:  148 IHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSK-LDIPILVDHYLKKELNLDSFITHELNFKEINKAF 371          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 80/228 (35.09%), Postives = 104/228 (45.61%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVN-TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HFL  S+FSEYTVV    + KI+P  P+DK  +LSCGVSTG+GA   VA  E+                              VD + ++FE  KKFG TDF+N T   +  I EVI EMT GGVD S EC G    +  AF     G G  +           S  S  +   +     L  G   + L  P+ +         L+ FITH + F EINKAF+ +
Sbjct:  149 IYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPK-LDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLL 375          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 77/228 (33.77%), Postives = 109/228 (47.81%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVN--TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*L-CSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            HFL  S+FSEYTV+    V KI+   P  + C+LSCGVSTG+GA    AK E+                              VD +  +F+  +KFGVT+FVN  T E +R + EVI EMT+GG D   EC G+   +  A+ C   G G  +   ++ P    C      ++  K     L  G   +  I P+ L    ++   L+KF+TH + F EIN AF+ +
Sbjct:  152 HFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNSMTCEKNR-VSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHI-PILLKRYLSNELELDKFVTHEMKFEEINDAFQLL 377          
The following BLAST results are available for this feature:
BLAST of CF417441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FRMA_ECO571.153e-2531.11S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.153e-2531.11S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FADH_YEAST2.569e-2534.05S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH4_HUMAN7.476e-2533.47Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH6_PONAB2.841e-2430.84Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH6_HUMAN2.841e-2430.84Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADHX_DICDI3.710e-2430.70Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHL1_ARATH3.710e-2435.56Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADHL5_ARATH4.846e-2435.09Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
ADHL7_ARATH8.265e-2433.77Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-371 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417441 ID=CF417441; Name=CF417441; organism=Citrus sinensis; type=EST; length=683bp
CTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTT
CATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGT
CTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATG
TGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCTCGGAGCT
GTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCATCAAGAAT
TATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAAAAGTTTG
GAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAATTCAAGAG
GTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCAC
CGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGGA
TGGGGGTGTAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCA
TGACCAAGCCAATCAATGTACTTAACGAAAGAACCCTCAAAGGAACTTTC
TTCGGGAACTACAAACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTA
CATGAACNAGCAACTGGNAACTAGAGAAGTTTATAACCCATCGCATCCCT
TTCTCGGAAATCAATAAAGCCTTCGAGTACATG
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