CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 1.374e-77 Identity = 134/159 (84.28%), Postives = 145/159 (91.19%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 + G+AV L+P+ E+ + +MRKT SKSVSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 160 HSP 2 Score: 97.8265 bits (242), Expect = 4.512e-20 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE Sbjct: 148 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 203
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 3.998e-77 Identity = 136/161 (84.47%), Postives = 147/161 (91.30%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SF GKAV +PS +E++ G+ +MRKT +K+ VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 12 SFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172 HSP 2 Score: 96.2857 bits (238), Expect = 1.313e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE Sbjct: 160 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 5.222e-77 Identity = 137/162 (84.57%), Postives = 149/162 (91.98%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SSF GKAVN+ PS ++++ G+ +MRKT +K+ VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 11 SSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171 HSP 2 Score: 95.9005 bits (237), Expect = 1.714e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE Sbjct: 159 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKE 214
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 5.222e-77 Identity = 134/162 (82.72%), Postives = 147/162 (90.74%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 S+F GK V L+PS +E++ G+ +MRKT +K+ VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+ Sbjct: 11 STFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGA 172 HSP 2 Score: 92.0485 bits (227), Expect = 2.476e-18 Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 160 LAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.163e-76 Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 S GKAV L P+ +E+ GRI+MRKT K +V S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+ Sbjct: 12 SLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 172 HSP 2 Score: 96.6709 bits (239), Expect = 1.005e-19 Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE Sbjct: 160 LAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 1.984e-76 Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SSF GKAV L+ S +E++ G+++MRKT +K+ SS SPWYGPDRVKYLGP SGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 11 SSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172 HSP 2 Score: 94.3597 bits (233), Expect = 4.988e-19 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 160 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 2.592e-76 Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 S GKAV L PS E+ GR+SMRKT +K VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+L G+ Sbjct: 13 SLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGA 168 HSP 2 Score: 97.8265 bits (242), Expect = 4.512e-20 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE Sbjct: 156 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 211
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 9.848e-76 Identity = 134/162 (82.72%), Postives = 147/162 (90.74%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SSF GKAVN+ PS +E++ G+++MRKT +K+ VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 11 SSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171 HSP 2 Score: 94.3597 bits (233), Expect = 4.988e-19 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKE Sbjct: 159 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKE 214
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 1.680e-75 Identity = 131/159 (82.39%), Postives = 143/159 (89.94%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 +F GKAV L+P +E+ GR++MRKT + SGSPWYG DRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 12 AFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 170 HSP 2 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE Sbjct: 158 LAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 1.422e-74 Identity = 135/163 (82.82%), Postives = 145/163 (88.96%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 ++F GKAVN+ S R++MRKT +K+ +SGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+ Sbjct: 11 TAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170 HSP 2 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF ELKVKE Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKE 213 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |