CF417455

Overview
NameCF417455
Unique NameCF417455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.168e-74
Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            ++F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   11 TAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170          

HSP 2 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE
Sbjct:  158 LAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.204e-73
Identity = 134/162 (82.72%), Postives = 144/162 (88.89%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            SSF GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVL G+
Sbjct:   11 SSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGA 171          

HSP 2 Score: 90.5077 bits (223), Expect = 7.203e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKE
Sbjct:  159 LAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKE 214          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.572e-73
Identity = 130/160 (81.25%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   12 AFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE
Sbjct:  159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 7.803e-73
Identity = 129/160 (80.62%), Postives = 143/160 (89.38%), Query Frame = 1
Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            +F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   12 AFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE
Sbjct:  159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.331e-72
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 1
Query:   61 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+L G+
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGA 150          

HSP 2 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKE
Sbjct:  138 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKE 193          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.873e-72
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            S+F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   11 STFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGA 169          

HSP 2 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKE
Sbjct:  157 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKE 212          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.472e-71
Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 1
Query:   61 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            GRI+MRKT  K    +SGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 167          

HSP 2 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE
Sbjct:  155 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 210          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.246e-70
Identity = 129/166 (77.71%), Postives = 140/166 (84.34%), Query Frame = 1
Query:   13 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 179          

HSP 2 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:  167 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKE 222          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.246e-70
Identity = 129/161 (80.12%), Postives = 138/161 (85.71%), Query Frame = 1
Query:    4 SFVGKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            +  GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   15 TLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 174          

HSP 2 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE
Sbjct:  162 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 217          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 4.734e-70
Identity = 131/154 (85.06%), Postives = 137/154 (88.96%), Query Frame = 1
Query:   31 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVL G+
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170          

HSP 2 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  158 LAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKE 213          
The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB29_MAIZE3.168e-7483.44Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_WHEAT1.204e-7382.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH1.572e-7381.25Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_ARATH7.803e-7380.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.331e-7291.43Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_HORVU3.873e-7281.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_MAIZE1.472e-7190.14Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY1.246e-7077.71Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA1.246e-7080.12Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_ORYSJ4.734e-7085.06Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-385 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAAT
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