CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 3.168e-74 Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 ++F GKAVN+ S L R++MRKT +K+ SSGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+ Sbjct: 11 TAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170 HSP 2 Score: 92.4337 bits (228), Expect = 1.895e-18 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE Sbjct: 158 LAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 1.204e-73 Identity = 134/162 (82.72%), Postives = 144/162 (88.89%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SSF GKAV PS + L R++MRKT +K+ VSS SPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVL G+ Sbjct: 11 SSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGA 171 HSP 2 Score: 90.5077 bits (223), Expect = 7.203e-18 Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKE Sbjct: 159 LAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKE 214
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 1.572e-73 Identity = 130/160 (81.25%), Postives = 144/160 (90.00%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 +F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 12 AFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171 HSP 2 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE Sbjct: 159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 7.803e-73 Identity = 129/160 (80.62%), Postives = 143/160 (89.38%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 12 AFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171 HSP 2 Score: 83.1889 bits (204), Expect = 1.150e-15 Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE Sbjct: 159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 1.331e-72 Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 1 Query: 61 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 GR+SMRKT SK+VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+L G+ Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGA 150 HSP 2 Score: 95.5153 bits (236), Expect = 2.239e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKE Sbjct: 138 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKE 193
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 3.873e-72 Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 S+F GKAV S +E+ R+SMRKT + GSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 11 STFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGA 169 HSP 2 Score: 93.2041 bits (230), Expect = 1.111e-18 Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKE Sbjct: 157 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKE 212
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 1.472e-71 Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 1 Query: 61 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 GRI+MRKT K +SGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+ Sbjct: 26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 167 HSP 2 Score: 96.6709 bits (239), Expect = 1.005e-19 Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE Sbjct: 155 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 210
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.246e-70 Identity = 129/166 (77.71%), Postives = 140/166 (84.34%), Query Frame = 1 Query: 13 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 G+ +L P N+L G R++MRK +K ++ S SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+ Sbjct: 14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 179 HSP 2 Score: 96.2857 bits (238), Expect = 1.313e-19 Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKE 222
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.246e-70 Identity = 129/161 (80.12%), Postives = 138/161 (85.71%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 + GK + L PS EL R +MRK T K SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 15 TLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 174 HSP 2 Score: 96.6709 bits (239), Expect = 1.005e-19 Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE Sbjct: 162 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 217
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 263.848 bits (673), Expect = 4.734e-70 Identity = 131/154 (85.06%), Postives = 137/154 (88.96%), Query Frame = 1 Query: 31 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 APS + L RI+MRKT +K + SSGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVL G+ Sbjct: 17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170 HSP 2 Score: 95.5153 bits (236), Expect = 2.239e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKE Sbjct: 158 LAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKE 213 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |