CF417455

Overview
NameCF417455
Unique NameCF417455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.058e-65
Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = 1
Query:   82 TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            T  K  SS SPW+GPD VKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 133          

HSP 2 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE
Sbjct:  121 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKE 176          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.988e-65
Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G
Sbjct:    9 SAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169          

HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  158 LAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.972e-64
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            +SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   10 TSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          

HSP 2 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE
Sbjct:  156 LAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.972e-64
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            +SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   10 TSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          

HSP 2 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE
Sbjct:  156 LAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.069e-64
Identity = 123/164 (75.00%), Postives = 133/164 (81.10%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            SS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGP S   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVL G
Sbjct:   10 SSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMG 170          

HSP 2 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKE
Sbjct:  159 LAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKE 214          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.647e-64
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1
Query:   64 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            R++MR+T SKS  S + WYG DR K+LGP SGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173          

HSP 2 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKE
Sbjct:  161 LAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKE 216          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.647e-64
Identity = 121/165 (73.33%), Postives = 134/165 (81.21%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVL G
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169          

HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  158 LAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.956e-63
Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 1
Query:    7 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVL G
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168          

HSP 2 Score: 60.8474 bits (146), Expect = 1.956e-63
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 2
Query:  473 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 610
            MG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE
Sbjct:  167 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.286e-63
Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 1
Query:   43 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            NELS        R+ M    SK+  SGS WYG DR  YLGP SG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+L G+
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170          

HSP 2 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE
Sbjct:  158 LAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.325e-63
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 1
Query:   13 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+L G
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171          

HSP 2 Score: 58.151 bits (139), Expect = 3.325e-63
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 2
Query:  473 MGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 610
            MG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKE
Sbjct:  170 MGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216          
The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_PEA2.058e-6587.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB24_SOLLC5.988e-6574.55Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ2.972e-6474.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.972e-6474.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH5.069e-6475.00Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_PHYPA8.647e-6481.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC8.647e-6473.33Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOLLC1.956e-6363.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_POLMU3.286e-6378.15Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_HORVU3.325e-6365.61Chlorophyll a-b binding protein of LHCII type III,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-385 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAAT
back to top