CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 7.320e-63 Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 1 Query: 58 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 GGR++MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G Sbjct: 4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMG 141 HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16 Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKE Sbjct: 130 LAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 185
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.249e-62 Identity = 120/165 (72.73%), Postives = 132/165 (80.00%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 S+F G+ S NEL GGR +MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G Sbjct: 9 SAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169 HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16 Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKE Sbjct: 158 LAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.803e-61 Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 61 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 GR SMR+T K+V S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMG 168 HSP 2 Score: 88.1965 bits (217), Expect = 3.575e-17 Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG +EGYR+ GGPLGE DPLYPGG+FDPLGLADDPEAFAELKVKE Sbjct: 157 LAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKE 212
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.169e-60 Identity = 120/165 (72.73%), Postives = 130/165 (78.79%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 S+F GK GNE N G R +MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVL G Sbjct: 9 SAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169 HSP 2 Score: 85.8853 bits (211), Expect = 1.774e-16 Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP++FAELKVKE Sbjct: 158 LAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.353e-58 Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 1 Query: 115 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 +YGPDR K+LGP S + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A A QVVL G Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMG 155 HSP 2 Score: 63.5438 bits (153), Expect = 1.353e-58 Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 2 Query: 473 MGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 MG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVKE Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 201
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.580e-57 Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 148 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 111 HSP 2 Score: 97.8265 bits (242), Expect = 4.512e-20 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE Sbjct: 99 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 154
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 4.252e-57 Identity = 87/135 (64.44%), Postives = 101/135 (74.81%), Query Frame = 1 Query: 79 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 K SKS SS + +YGPD L + P TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A A QVVL G Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMG 178 HSP 2 Score: 79.7221 bits (195), Expect = 4.252e-57 Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 2 Query: 473 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 MG VEGYR+ GGP GE DPLYPG +FDPLGLADDP+ FAELKVKE Sbjct: 177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKE 222
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.610e-52 Identity = 107/157 (68.15%), Postives = 117/157 (74.52%), Query Frame = 1 Query: 10 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 + K L P + L +M K +KS S S RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW +V+L G+ Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGA 174 HSP 2 Score: 80.8777 bits (198), Expect = 5.707e-15 Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE Sbjct: 162 LAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKE 216
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.105e-31 Identity = 66/139 (47.48%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 88 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 SK+VS S WYGPDR +L G L E P YL GE GDYG+D GL PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G I +LA+ A V+L G+ Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGA 185 HSP 2 Score: 50.447 bits (119), Expect = 4.105e-31 Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 2 Query: 473 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 +G E YRI G + D L+PGG FDPLGLA DPE A LKVKE Sbjct: 182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKE 225
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23 Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1 Query: 316 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 54 HSP 2 Score: 82.0333 bits (201), Expect = 2.562e-15 Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG +EGYR+ GGPLGE DPLYPG +FDPLGLADDPEA AELKVKE Sbjct: 43 LAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |