CF417455

Overview
NameCF417455
Unique NameCF417455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.320e-63
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 1
Query:   58 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            GGR++MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMG 141          

HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  130 LAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 185          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.249e-62
Identity = 120/165 (72.73%), Postives = 132/165 (80.00%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169          

HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  158 LAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.803e-61
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   61 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            GR SMR+T  K+V   S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMG 168          

HSP 2 Score: 88.1965 bits (217), Expect = 3.575e-17
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAFAELKVKE
Sbjct:  157 LAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKE 212          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.169e-60
Identity = 120/165 (72.73%), Postives = 130/165 (78.79%), Query Frame = 1
Query:    1 SSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:    9 SAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169          

HSP 2 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE
Sbjct:  158 LAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.353e-58
Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 1
Query:  115 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            +YGPDR K+LGP S  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVL G
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMG 155          

HSP 2 Score: 63.5438 bits (153), Expect = 1.353e-58
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 2
Query:  473 MGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            MG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKE
Sbjct:  154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 201          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.580e-57
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1
Query:  148 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 111          

HSP 2 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE
Sbjct:   99 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 154          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.252e-57
Identity = 87/135 (64.44%), Postives = 101/135 (74.81%), Query Frame = 1
Query:   79 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            K  SKS SS + +YGPD       L  + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVL G
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMG 178          

HSP 2 Score: 79.7221 bits (195), Expect = 4.252e-57
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  473 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            MG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKE
Sbjct:  177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKE 222          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.610e-52
Identity = 107/157 (68.15%), Postives = 117/157 (74.52%), Query Frame = 1
Query:   10 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            + K   L P  + L      +M K  +KS  S S      RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+L G+
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGA 174          

HSP 2 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE
Sbjct:  162 LAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKE 216          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.105e-31
Identity = 66/139 (47.48%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   88 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480
            SK+VS  S     WYGPDR  +L  G L   E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A  V+L G+
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGA 185          

HSP 2 Score: 50.447 bits (119), Expect = 4.105e-31
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 2
Query:  473 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            +G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKE
Sbjct:  182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKE 225          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:  316 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 54          

HSP 2 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVKE
Sbjct:   43 LAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98          
The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB25_SOLLC7.320e-6380.71Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP1.249e-6272.73Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_LEMGI1.803e-6182.01Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.169e-6072.73Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_DUNTE1.353e-5872.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.580e-5792.79Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA4.252e-5764.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.610e-5268.15Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH4.105e-3147.48Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_PINSY9.672e-2392.59Chlorophyll a-b binding protein type 2 member 2 (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-385 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAAT
back to top