CF417455

Overview
NameCF417455
Unique NameCF417455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:  160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:  160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:    9 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:  158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE
Sbjct:  158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.266e-19
Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 1
Query:    4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 417
            S VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:   11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 41.9726 bits (97), Expect = 4.266e-19
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  536 YPGGSFDPLGLADDPEAFAELKVKE 610
            YPGG+FDPLG + DP  F ELK+KE
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKE 191          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.899e-18
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  151 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 417
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          

HSP 2 Score: 42.743 bits (99), Expect = 5.899e-18
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  536 YPGGSFDPLGLADDPEAFAELKVKE 610
            YPGG+FDPLG + DP  F ELKVKE
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKE 192          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  163 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   85 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKE
Sbjct:   16 LAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72          
The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2F_SOLLC2.924e-1983.93Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.924e-1983.93Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.924e-1983.93Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.924e-1983.93Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.924e-1983.93Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB121_HORVU4.266e-1935.71Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC5.899e-1842.86Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC2.551e-1539.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY7.423e-1536.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.076e-1371.93Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-385 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAAT
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