CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 9 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKE Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.266e-19 Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 1 Query: 4 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 417 S VG LAPS +G T S V+ + W+ G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132 HSP 2 Score: 41.9726 bits (97), Expect = 4.266e-19 Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2 Query: 536 YPGGSFDPLGLADDPEAFAELKVKE 610 YPGG+FDPLG + DP F ELK+KE Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKE 191
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.899e-18 Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 151 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 417 + G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P Sbjct: 50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133 HSP 2 Score: 42.743 bits (99), Expect = 5.899e-18 Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 2 Query: 536 YPGGSFDPLGLADDPEAFAELKVKE 610 YPGG+FDPLG + DP F ELKVKE Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKE 192
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15 Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1 Query: 163 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456 PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1 Query: 85 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 456 GS+SV+ + PDR + PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA Sbjct: 50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13 Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVKE Sbjct: 16 LAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |