CF417455

Overview
NameCF417455
Unique NameCF417455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.213e-13
Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  473 MGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610
            MGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKE
Sbjct:   22 MGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70          

HSP 2 Score: 28.1054 bits (61), Expect = 2.213e-13
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  418 SLIHAQSILAIWACQVVLXGS 480
            +LIHA+S+LAI A QV+L G+
Sbjct:    4 ALIHAKSLLAILATQVLLMGA 24          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  154 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 381
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  163 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 366
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          

HSP 3 Score: 63.929 bits (154), Expect = 2.947e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  166 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 369
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72          

HSP 4 Score: 25.0238 bits (53), Expect = 2.947e-11
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 2
Query:  491 YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 601
            + +A G + E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   93 FEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.060e-11
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  169 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 372
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTG 140          

HSP 2 Score: 34.6538 bits (78), Expect = 1.060e-11
Identity = 19/56 (33.93%), Postives = 30/56 (53.57%), Query Frame = 2
Query:  446 PSGLARWSXMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKE 610
            P  + +   +G  +G+  +G       +P YPGG F +PLG   D ++  ELK+KE
Sbjct:  179 PGSMGKQYFLGLEKGFGGSG-------NPAYPGGPFFNPLGFGKDEKSLKELKLKE 227          
The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_EUGGR2.213e-1371.43Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR5.320e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB23_PEA1.060e-1148.68Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-385 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bp
TCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
CTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAA
GGTTAAGGAAAT
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