CF417458

Overview
NameCF417458
Unique NameCF417458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SUR8_DROGR (Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 64/257 (24.90%), Postives = 108/257 (42.02%), Query Frame = 1
Query:    7 LRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHI----------------------VGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQLQ 708
            LR   +L  + L  N +   +  A G   NLT +D+S N+    +  + G C  L AL++  N +   IP  IGN   L  L L  N +                      + ++P   L  L++LT + L  NQ T         F  +  ++L  NR +  +P                   +  LP ++   V + EL+ + N    ++P  I +L++LE L LS NN+   IPN    +  L ++D+ +N+++
Sbjct:  252 LRQLVNLTMLSLRENKIK-ELGSAIGALVNLTTLDVSHNHLE-HLPEDIGNCVNLSALDLQHNELLD-IPDSIGNLKSLVRLGLRYNRLNCVPVSLKNCKSMDEFNVEGNGITQLPDGMLASLSALTSITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDK-IPYGIFSRAKGLTKLNMKENMLTALPLDVGTWVNMVELNLATNALQ-KLPDDIMNLQNLEILILS-NNMLKKIPNTIGNLRKLRILDLEENRIE 502          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 43/128 (33.59%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   49 NNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVP 432
            NNL G I   FG+ PN T I+++ NN    I  +      L +LN+S N+++G +   + +  Q++ +DLS N++ G++P   G L +LT L L+ N+LTG +     A   L  L++  N+F+  +P
Sbjct:  105 NNLEGEIP--FGLPPNATHINMAYNNLTQSIPFSLPLMTSLQSLNLSHNSLSGPLG-NVFSGLQIKEMDLSFNNLTGDLPSSFGTLMNLTSLYLQNNRLTGSV--IYLADLPLADLNIEDNQFSGIIP 227          
The following BLAST results are available for this feature:
BLAST of CF417458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
SUR8_DROGR5.076e-1124.90Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
SRF2_ARATH6.629e-1133.59Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-388 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417458 ID=CF417458; Name=CF417458; organism=Citrus sinensis; type=EST; length=709bp
AAAAGCTTGAGAAATTGCACAAGCTTAATCCGAGTACGGCTTGATGGAAA
CAACCTTACTGGAAATATTTCAAAAGCTTTCGGCATTTATCCTAACCTGA
CTTTCATAGATCTCAGCCGCAATAATTTTTACGGTGAAATCTCGTCTAAC
TTTGGGGAATGCCCAAAATTAGGCGCTCTCAACATTTCGAGGAATAACAT
TACTGGAGGTATACCGTGTGAGATTGGAAACTGGTCTCAACTACAAGCAC
TCGATCTTTCATTGAATCATATAGTTGGGGAGATTCCAAAGGAACTTGGG
AAGTTAAATTCGCTAACCAAGCTCATTTTGAGAGGGAATCAACTTACAGG
ACGCCTGCCTACAGAAATCGGCGCATTCAATGAACTTGAATACCTCGACT
TATCTGCAAATAGATTCAACAATTCAGTCCCAGAAAGTCTCGGCCACTTG
CTGAAATTGCACTACTTGGATTTAAGCAACAACCAGTTTGTCCAAGAATT
GCCAAAGGAATTGGAGAAGCTAGTTCAACTTTCAGAATTAGATGCAAGTC
ATAACCTCTTTGGAGGAGAGATACCATTTCAAATATGCAGTTTGAAAAGC
TTGGAAAAGTTGAATCTCTCCCACAATAATCTCTCTGGTTCGATTCCAAA
TTGCTTTGAGGGAATGCACGGTCTATCAGTCATTGACATTTCTGATAATC
AATTGCAAG
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