CF417458

Overview
NameCF417458
Unique NameCF417458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   97 LTFIDLSRNNFYGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVP 432
            +T +DL      G++    G+   L  L +  NNITG IP E+G+  +L +LDL  N I G IP  LGKL  L  L L  N L+G +P  + +  +L+ LD+S NR +  +P
Sbjct:   77 VTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIP 187          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 64/239 (26.78%), Postives = 108/239 (45.19%), Query Frame = 1
Query:    4 SLRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNF----------YGEISS--------------NFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIP 648
            SL NC+ +    ++GNN+     K      NLT + LSRN F          + ++++               F +   L  LN+  N +T  +P + G+W  L  L+++ N I  ++P+++  L +L  LIL  N L  +LP  IGA  +L  LD+  N+  +   E             SN   +  LP+ +  L  ++ L    N     +P +I +++SLE+L L+ N    S+P
Sbjct:  288 SLANCSGIDEFNIEGNNIAELPEKLLSSLKNLTSLTLSRNKFEVFPAGPPKQFCQVNTFIMEHNRMQKIPFGVFNKAKYLSKLNVKDNQLT-SLPLDFGSWISLVELNVATNQI-SKLPEDIQWLVNLEVLIL-SNNLLKKLPRGIGALRKLRVLDIEENKLESIPTEIEYLRSLERLVLQSN--CLGSLPRSIGYLSSVTYLSVGENEL-VSVPQEIGNMESLEQLYLNDNENLQSLP 520          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: LRRA_DICDI (Leucine-rich repeat protein lrrA OS=Dictyostelium discoideum GN=lrrA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 62/206 (30.10%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   22 SLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNF-YGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 636
            +L ++ L GNN+   + +  G   NL  +DL +N      I S  G+   L  L +S NN+   +P EI +   L+  + S N +   IP E+G+L+ LTK+ L GN+LT  +P   G  +EL+  DL +N                          + ELP  L+ L   +++D SHN+   E+P++   L  L  L++ HN L+
Sbjct:  294 NLQKLDLFGNNMR-IVPREVGNLINLQTLDLRQNKLTIDNIPSEIGKLVNLKKLLLS-NNLLIALPPEIASMKALKEFEASNNQLQA-IPTEIGELSGLTKINLSGNKLTS-IPASFGNLSELQICDLKSNE-------------------------IAELPTTLDGLKSCTKIDLSHNML-TELPWEFGDLIGLTILDVGHNPLT 469          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 69/235 (29.36%), Postives = 105/235 (44.68%), Query Frame = 1
Query:   67 ISKAFGIYPNLTFIDLSRNNF--------------YGEISSN--------FGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 705
            I+   G   NLT +DLS N                Y +IS N        FG+   L   N S+N++   +P EI  W +L+ L++S N +   +P ++  L  L+ L +  N+L  +LP E+ +   L  LDL  N     VP+               N  +  LP  L  L +L ELD   N    EIP+ I +L +L+KL+L  NN+   +P     +  L  +D+  N+L
Sbjct:  100 ITPNIGALKNLTRLDLSSNQLDDLPVEISNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKS-LPSEISGWVKLEELNVSNNQLAF-LPNQICLLGLLSTLNVGFNKLQ-QLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLRQLKILSI--RNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR-IVPREVGNLINLQTLDLRQNKL 328          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 44/143 (30.77%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    7 LRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPE 435
            L +  SL ++ + GN++   +   + + PNLT ++L+RNN  G +  +      L  +N+S N++T  I     +   L  LDLS N+  G++P  L  +++L+ L ++ NQLTG +    G    L+ L+++ N FN S+P+
Sbjct:   93 LSDLKSLRKLDVSGNSIHDTLP--YQLPPNLTSLNLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLPSSLSTVSTLSVLYVQNNQLTGSIDVLSGL--PLKTLNVANNHFNGSIPK 231          

HSP 2 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 48/157 (30.57%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  178 LNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIP 648
            ++IS   ++G +   + +   L+ LD+S N I   +P +L    +LT L L  N L+G LP  I A   L Y+++S N    S+ +             S+N F  +LP  L  +  LS L   +N   G I   + S   L+ LN+++N+ +GSIP
Sbjct:   78 IDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPP--NLTSLNLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLPSSLSTVSTLSVLYVQNNQLTGSI--DVLSGLPLKTLNVANNHFNGSIP 230          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 64/217 (29.49%), Postives = 102/217 (47.00%), Query Frame = 1
Query:    7 LRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGECPKLGALNISRNNI-TGGIPCEIGNWSQLQALDLSLNHIVGEIPKELG--KLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIP 648
            LRN + L R+ L  NN++G +    G+  +L  + LS NNF    S  F     L ++ I  N   +  IP  + N S LQ    +  ++ G +P  LG  +   L+ L L  N L G LP  + A ++++ L L+  +    +               S N+F   LP +   L +L  L    N F G +P  + SL+SL+ +NL++N+L G +P
Sbjct:   84 LRNLSELERLELQWNNISGPVPSLSGL-ASLQVLMLSNNNFDSIPSDVFQGLTSLQSVEIDNNPFKSWEIPESLRNASALQNFSANSANVSGSLPGFLGPDEFPGLSILHLAFNNLEGELPMSL-AGSQVQSLWLNGQKLTGDITVLQNMTGLKEVWLHS-NKFSGPLP-DFSGLKELESLSLRDNSFTGPVPASLLSLESLKVVNLTNNHLQGPVP 296          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  133 GEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPE 435
            G +S + G    L  +++  NNI+G IP EI +  +LQ LDLS N   GEIP  + +L++L  L L  N L+G  P  +     L +LDLS N     VP+
Sbjct:   88 GTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPK 188          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   25 LIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGE-CPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNE 384
            ++ ++L    L+G I ++  +  +L  +DLS N+F G I S      P L  L++S N ++G IP +I +   L +L L+ N + G IP EL +LN L +L L  N L+G +P+E+  + E
Sbjct:   67 ILSLQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLSGSIPSELSHYGE 187          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 69/256 (26.95%), Postives = 113/256 (44.14%), Query Frame = 1
Query:    1 KSLRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNF----------YGEISS--------------NFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 696
            +SL  C++L  + L+ NN++            L  + L+RN F          +  I S               F     L  LN+  N +T  +P + G W+ +  L+L+ N +  +IP+++  L SL  LIL  N L  +LP  +G   +L  LDL  N+   S+P              +NNQ +  LP+ +  L  L+ L    NL    +P +I +L++LE+L L+ N    S+P        LS++ I +
Sbjct:  301 RSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLT-SLPLDFGTWTSMVELNLATNQLT-KIPEDVSGLVSLEVLIL-SNNLLKKLPHGLGNLRKLRELDLEENKL-ESLPNEIAYLKDLQKLVLTNNQ-LSTLPRGIGHLTNLTHLGLGENLL-THLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIEN 550          

HSP 2 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 73/240 (30.42%), Postives = 106/240 (44.17%), Query Frame = 1
Query:    4 SLRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNFYGEISSNFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKEL-EKLVQLSELDASHNLF-----GGEIPFQICSLKSLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISDNQL 705
            SL N   L  + L  N L    S  + +  +LT + L R N    +  +    PKL  L+I  N I   +P EIG    L  LD++ N +   +PKE+G    +T L L+ N L   LP  IG  + L  L L  NR + ++P S             NN  +  LP+ L   LV+L+ L  + N F     GG   F      ++  LN+ HN ++      F     LS +++ DNQL
Sbjct:  164 SLDNLKKLRMLDLRHNKLREIPSVVYRL-DSLTTLYL-RFNRITTVEKDIKNLPKLSMLSIRENKIKQ-LPAEIGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNDLLD-LPDTIGNLSSLNRLGLRYNRLS-AIPRSLAKCSALEELNLENNN-ISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFS-----TIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQL 391          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: LRC40_CHICK (Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 59/204 (28.92%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  163 PKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG--SIPNC--------------------FEGMHGLSVIDISDNQLQ 708
            P L  L++  N +T  +P  +G    LQ LD+S N +   IP+EL +L+ L  L+L+ N+L+  LP   G    LE LDLS N   + +P+S            + NQ +++LP ++  +  L +LD + N     +P ++ S+ SLE+L L  N L     +P+C                     + ++ LSV+++ DN+++
Sbjct:  105 PALTVLDVHDNQLTS-LPSALGQLENLQKLDVSHNKLKS-IPEELLQLSHLKGLLLQHNELS-HLPDGFGQLVSLEELDLSNNHLTD-IPKSFALLINLVRLNLACNQ-LKDLPADISAMKSLRQLDCTKNYLES-VPSELASMASLEQLYLRKNKLRSLPELPSCKLLKELHAGENQIEILNAENLKHLNSLSVLELRDNKIK 302          
BLAST of CF417458 vs. ExPASy Swiss-Prot
Match: SHOC2_RAT (Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 69/256 (26.95%), Postives = 113/256 (44.14%), Query Frame = 1
Query:    1 KSLRNCTSLIRVRLDGNNLTGNISKAFGIYPNLTFIDLSRNNF----------YGEISS--------------NFGECPKLGALNISRNNITGGIPCEIGNWSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGAFNELEYLDLSANRFNNSVPESXXXXXXXXXXXXSNNQFVQELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGSIPNCFEGMHGLSVIDISD 696
            +SL  C++L  + L+ NN++            L  + L+RN F          +  I S               F     L  LN+  N +T  +P + G W+ +  L+L+ N +  +IP+++  L SL  LIL  N L  +LP  +G   +L  LDL  N+   S+P              +NNQ +  LP+ +  L  L+ L    NL    +P +I +L++LE+L L+ N    S+P        LS++ I +
Sbjct:  301 RSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLT-SLPLDFGTWTSMVELNLATNQLT-KIPEDVSGLVSLEVLIL-SNNLLKKLPHGLGNLRKLRELDLEENKL-ESLPNEIAYLKDLQKLVLTNNQ-LTTLPRGIGHLTNLTHLGLGENLL-THLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIEN 550          
The following BLAST results are available for this feature:
BLAST of CF417458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
SERK4_ARATH2.434e-1338.39Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SHOC2_NEMVE4.152e-1326.78Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
LRRA_DICDI4.152e-1330.10Leucine-rich repeat protein lrrA OS=Dictyostelium ... [more]
SRF8_ARATH5.423e-1330.77Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
TMK1_ARATH1.208e-1229.49Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y2239_ARATH1.578e-1238.61Probable LRR receptor-like serine/threonine-protei... [more]
Y1699_ARATH1.578e-1234.71Probable LRR receptor-like serine/threonine-protei... [more]
SHOC2_MOUSE1.578e-1226.95Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]
LRC40_CHICK1.578e-1228.92Leucine-rich repeat-containing protein 40 OS=Gallu... [more]
SHOC2_RAT2.061e-1226.95Leucine-rich repeat protein SHOC-2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-388 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417458 ID=CF417458; Name=CF417458; organism=Citrus sinensis; type=EST; length=709bp
AAAAGCTTGAGAAATTGCACAAGCTTAATCCGAGTACGGCTTGATGGAAA
CAACCTTACTGGAAATATTTCAAAAGCTTTCGGCATTTATCCTAACCTGA
CTTTCATAGATCTCAGCCGCAATAATTTTTACGGTGAAATCTCGTCTAAC
TTTGGGGAATGCCCAAAATTAGGCGCTCTCAACATTTCGAGGAATAACAT
TACTGGAGGTATACCGTGTGAGATTGGAAACTGGTCTCAACTACAAGCAC
TCGATCTTTCATTGAATCATATAGTTGGGGAGATTCCAAAGGAACTTGGG
AAGTTAAATTCGCTAACCAAGCTCATTTTGAGAGGGAATCAACTTACAGG
ACGCCTGCCTACAGAAATCGGCGCATTCAATGAACTTGAATACCTCGACT
TATCTGCAAATAGATTCAACAATTCAGTCCCAGAAAGTCTCGGCCACTTG
CTGAAATTGCACTACTTGGATTTAAGCAACAACCAGTTTGTCCAAGAATT
GCCAAAGGAATTGGAGAAGCTAGTTCAACTTTCAGAATTAGATGCAAGTC
ATAACCTCTTTGGAGGAGAGATACCATTTCAAATATGCAGTTTGAAAAGC
TTGGAAAAGTTGAATCTCTCCCACAATAATCTCTCTGGTTCGATTCCAAA
TTGCTTTGAGGGAATGCACGGTCTATCAGTCATTGACATTTCTGATAATC
AATTGCAAG
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