CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 77/190 (40.53%), Postives = 109/190 (57.37%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAP-LYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD+IHCHDWQ+A +   L ++L      N   V FT HN  YQG  PA  LA  GLD   L   DR++    + RIN LKGAI+ ++ +TTVS +Y  E+ +   G GL   L        GILNG+D++ WNP+ D  +   Y++  L GK  +K  +++ LGL  A A  P++G + R+V QKG+ L+
Sbjct:  131 PDVIHCHDWQSALIPIILKYELGHDPFFNRTAVIFTIHNLAYQGVFPADALAQTGLD-PSLFSVDRIE---FYGRINLLKGAILAADAITTVSETYCHEILSPGQGCGLEGVLERRQADLAGILNGLDSEEWNPSLDRRIFRNYSSKSLAGKGADKRELQRELGL-KAGASIPIIGMVGRIVEQKGIDLV 315          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 78/199 (39.20%), Postives = 103/199 (51.76%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGA 599
            PDIIH +DWQT  V       +    L  A+  FT HN  YQG  P   +    L        D ++    HD +N LK  +VFS+ +TTVSP+YA+E++T E G GL   L   + +  GILNG+DT  WNP  D FL  +Y   DL GKA  K  +    GL   D   P+ G ++RL  QKG+ L+  A+   L A
Sbjct:  132 PDIIHANDWQTGLVPVALRRGFQTGPLAHAKSVFTIHNLAYQGQFPKDVMGDLALPWDLFTAHDGLE---FHDTVNFLKAGLVFSDALTTVSPTYAREIQTPEQGYGLDGLLRHRAHRLHGILNGVDTHEWNPEDDAFLPARYGLKDLSGKAVCKRELLARFGLE--DGPAPVFGFVSRLAWQKGMDLLLEALPAALHA 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.147e-31
Identity = 79/198 (39.90%), Postives = 109/198 (55.05%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNA-NDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PDIIHCHDW +A VA L+ + Y   GL+ +R+ FT HN E+            G D+                    +  A+  ++  TTVSP+Y+QEV  +         +  H  KF GI+NGID D W+P  D F+ + Y + N ++GK   KE++++ LGL  AD   PLVG ITRL  QKG+HLI+HAI+RTL
Sbjct:  902 PDIIHCHDWSSAPVAWLFKEQYTHYGLSKSRIVFTIHNLEF------------GADL--------------------IGRAMTNADKATTVSPTYSQEVSGNP-------VIAPHLHKFHGIVNGIDPDIWDPLNDKFIPIPYTSENVVEGKTAAKEALQRKLGLKQADL--PLVGIITRLTHQKGIHLIKHAIWRTL 1058          

HSP 2 Score: 26.5646 bits (57), Expect = 1.147e-31
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  614 ILLGSSPVPHIQREFEGIAN 673
            +LLGS+P P +Q  F  +AN
Sbjct: 1065 VLLGSAPDPRVQNNFVNLAN 1084          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 77/194 (39.69%), Postives = 108/194 (55.67%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYW-----DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD+IHCHDWQTA +  L       DL+  K      V FT HN  YQG    + LA  GLD         +     + ++N +KGAI+ ++++TTVS +Y +E++T E G GL   L   +    G+LNG+D D W+PATD  L   Y+     GKA NK+ ++K LGL  A A  P++G ++RL  QKG  L+
Sbjct:  131 PDVIHCHDWQTALIPLLLRREKGEDLFFSK----TGVMFTIHNLAYQGLFAKETLAEMGLDSSYFT----IDCLEYYGKVNLMKGAILSADLITTVSETYCREIQTPESGNGLDGVLGVRNADLHGVLNGLDYDLWDPATDRGLYKNYSVTAPAGKAVNKKGLQKLLGLEPA-ADVPVIGIVSRLTAQKGFDLL 315          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 79/199 (39.70%), Postives = 111/199 (55.78%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKG----LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYR 587
            PDIIHCHDWQTA + PL   L   KG     +     FT HN  YQG  P + +   GLD   L   D ++    + ++N +KGAI+ ++++ TVS +Y +E+ T E G GL   L        G+LNGID + WNPATD  +   +      GKA NK++++K LGL  A+   PLVG ++RL  QKG+ L+   + R
Sbjct:  131 PDIIHCHDWQTAMI-PLI--LKKEKGDDLFFSKTGTVFTIHNLAYQGLFPKEAMVDMGLD-PSLFTIDCLE---YYGKVNLIKGAILTADVINTVSETYCREILTPESGDGLDGVLTLRKNDLYGVLNGIDYEHWNPATDRGISKNFTPGAPAGKAANKKALQKRLGLEIAE-DIPLVGMVSRLTEQKGLDLLEALLPR 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 79/212 (37.26%), Postives = 117/212 (55.19%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGL--DVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR---------HAIYRTLGAG 602
            PDI HCHDWQ+A +  L   LY      + A++ FT HN  YQG  P + L    L  D+  L + +       + ++N LKGA+V+++ VTTVS  YA E++T+E G GL   L   S    GILNG+D   W+P TD F+  +++A+ L  KA++K  + +  GL   + + P+VG ++R   QKG  LI+          AI+  LG+G
Sbjct:  129 PDIFHCHDWQSALIPVLLRTLYAEDPAFDHAKIVFTIHNMGYQGLFPGEILPLLMLPWDLFTLTKME------FYGKVNFLKGALVYADFVTTVSRRYALEIQTAEYGFGLEGVLRGRSGTVAGILNGVDYSEWSPETDRFIAAKFSADSLAAKAQDKADLLREFGL--PETKLPVVGIVSRFAAQKGFDLIQQVGDRLAREEAIFVVLGSG 332          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_SULSY (Glycogen synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glgA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 83/195 (42.56%), Postives = 107/195 (54.87%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAP--AKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PD+IH +DWQTA +  L +  Y     +  R   T HN  YQG     A E  + G D+        M+    +D++N LKG IVFS+ +TTVSP+YA+E+   E G GL   L  +S K  GILNGID D WNP TD ++   Y    +Q K+ NK+   K +GL   D  KPL   I RL  QKGV LIR +I
Sbjct:  130 PDLIHVNDWQTALIPVLNYHKY---NNHHVRTVITIHNLAYQGIFDKFAIERLNLGWDLFH------MEALEYYDKVNFLKGGIVFSSAITTVSPTYAKEITFPEYGYGLDGVLRKYSNKLYGILNGIDYDVWNPETDKYIYENYCVFTIQKKSINKKLFLKEVGLK--DEAKPLYIFIGRLAHQKGVDLIRDSI 313          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PELCD (Glycogen synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glgA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTC-HNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+I+H +DWQT  V  L    +      +     T  HN  YQG  PA+ +A+ GLD         M+    +D+++ LK  +V+++++TTVS +Y  E++T + G G    L+  + +  G+LNGID   WNP  D  L   Y+ +DL+GKA NK  ++K LGL S DA  PL+  +TRL  QKG+ L+  A  + L  G
Sbjct:  131 PEILHLNDWQTGLVPALLRTEWAEDPFYAGTATMTTIHNLGYQGLFPAETVATLGLDPALYT----MEGLEYYDQVSFLKSGLVYADMITTVSETYCAEIQTPQMGHGFDGILHARAARLFGVLNGIDDKLWNPQCDPALTAPYSVDDLEGKAANKRQLQKQLGL-SCDADVPLLTMVTRLASQKGLDLVEQAWEQLLQRG 326          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 80/194 (41.24%), Postives = 112/194 (57.73%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H +DWQTA +      +Y   P    +A V  T HN  YQG    K L+  GL       PD    +     + ++N LKG IVFS+++ TVSP+YA+E++T E G+ L   L   SK   GILNGID + +NPATD ++ V Y+ N L+ K ENK  +++ LGL   +    + G I+RLVPQKG+ L+
Sbjct:  132 PDIVHVNDWQTALIPVYLKTVYRDDPYFSRTATV-LTIHNLGYQGVFDPKYLSFAGL-------PDYVFTIDGLEFYRQLNFLKGGIVFSDVINTVSPTYAEEIQTEEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGL-PVNKETAVAGLISRLVPQKGLDLL 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 80/194 (41.24%), Postives = 112/194 (57.73%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H +DWQTA +      +Y   P    +A V  T HN  YQG    K L+  GL       PD    +     + ++N LKG IVFS+++ TVSP+YA+E++T E G+ L   L   SK   GILNGID + +NPATD ++ V Y+ N L+ K ENK  +++ LGL   +    + G I+RLVPQKG+ L+
Sbjct:  132 PDIVHVNDWQTALIPVYLKTVYRDDPYFSRTATV-LTIHNLGYQGVFDPKYLSFAGL-------PDYVFTIDGLEFYRQLNFLKGGIVFSDVINTVSPTYAEEIQTEEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGL-PVNKETAVAGLISRLVPQKGLDLL 316          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA2_GEOMG4.749e-3240.53Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_MYXXD1.058e-3139.20Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
SSY3_SOLTU1.147e-3139.90Soluble starch synthase 3, chloroplastic/amyloplas... [more]
GLGA_GEOUR2.357e-3139.69Glycogen synthase OS=Geobacter uraniireducens (str... [more]
GLGA_GEOSF3.079e-3139.70Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_ACIBL3.079e-3137.26Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_SULSY6.858e-3142.56Glycogen synthase OS=Sulfurihydrogenibium sp. (str... [more]
GLGA_PELCD6.858e-3136.82Glycogen synthase OS=Pelobacter carbinolicus (stra... [more]
GLGA_THESQ8.957e-3141.24Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP18.957e-3141.24Glycogen synthase OS=Thermotoga petrophila (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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