CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 73/198 (36.87%), Postives = 101/198 (51.01%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFV-APLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++H HDWQTA V A LY+           R   T HN  +QG   ++   + GL  Q  +    +         N LK  I +++ VTTVSPSYA+E+     G GL   L   +    GILNG D D W+P  D FL  +Y   DL GKA+ K ++ + LGL    AR+P++G I RL  QKG+ L+   + R +
Sbjct:  133 PAVLHAHDWQTALVPAFLYFLRQGDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAEFWGDFNLLKAGIAYADKVTTVSPSYAREILGPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRYTPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLM 326          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_DESAA (Glycogen synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 61/193 (31.61%), Postives = 104/193 (53.89%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PD+I  +DWQT  +  L    ++P+  +     F  HN  Y G  P ++ +  GL    L+     +    + +++ LK  I ++N + TVSP+Y++E++T+E G GL   +   S+   GILNG+D   W+P TD  +   Y+  D+ GK + K+++   +G+ S     P+ G +TRL  QKG+ L+  A+
Sbjct:  132 PDVILANDWQTGLIPALMDQGHMPQTAS----VFVIHNIGYLGYVPPEDASMLGLSNTYLS----YEGMEFYGQLSLLKAGIAYANKLVTVSPTYSREIQTTEQGAGLDGLMRKRSQDLAGILNGVDFQVWSPETDKHIPCNYSTADMAGKGKCKKALLDEMGMDSQLMNAPVAGMVTRLFSQKGIELVIGAV 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 64/191 (33.51%), Postives = 108/191 (56.54%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQL-NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            D++H HDW TA V  L  + Y    L    +  +T HN ++QG  P + +     D+ +L +     +    +  +N +KG I+ S+ +T VSP+Y +E++    G+ L   L  ++ K  GI+NGIDT  +NP TD+++  QY+A+ L  K ENK +++++ GL   +   P++  +TRL  QKG+ L+R
Sbjct:  127 DVLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVYTIHNLQFQGVFPPEVM----YDLLELGDEYFHSEQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYEKNENKRALQRYFGLPEKE-DTPIISMVTRLTKQKGLDLVR 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BACAN (Glycogen synthase OS=Bacillus anthracis GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 64/191 (33.51%), Postives = 108/191 (56.54%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQL-NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            D++H HDW TA V  L  + Y    L    +  +T HN ++QG  P + +     D+ +L +     +    +  +N +KG I+ S+ +T VSP+Y +E++    G+ L   L  ++ K  GI+NGIDT  +NP TD+++  QY+A+ L  K ENK +++++ GL   +   P++  +TRL  QKG+ L+R
Sbjct:  127 DVLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVYTIHNLQFQGVFPPEVM----YDLLELGDEYFHSEQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYEKNENKRALQRYFGLPEKE-DTPIISMVTRLTKQKGLDLVR 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANATD (Glycogen synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQG-KAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            DIIH +DW T+ +  L    Y      N  +   T HN +YQG  P + +         L+ PD          +D I+ LKG I++S+ V TVS +YA EVRT   G+GLH  L+   +K +GI+NGID + +NPATD  + V Y++N  +  K ENK  +++ L L  +D    L+G ++RL  +KG+ LI   I + L
Sbjct:  127 DIIHVNDWHTSVIPVLLKAHYGHSDKHNKIKTILTIHNLKYQGIFPKEVMYDL------LSLPDEYFSEDKLKFYDAISFLKGGIIYSDKVVTVSRTYANEVRTLSYGEGLHGLLSGIGEKLIGIINGIDYEVYNPATDKLIFVNYDSNTFENRKKENKFRLQQMLNLPVSD-EIVLIGMVSRLTKEKGIELIERIINKLL 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPB (Glycogen synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLN--FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L       +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALVRQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHOFD (Glycogen synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD+IHCHDW +  + P Y   +      +    FT HN  YQG   A E+   GL     +    +       +++ +K A+ +++ +TTVSP+YA+E+ +   G GL   L   +    GILNG+D   WNPATD  L   Y+ + LQGK   K +++   GL    A   + G ++RL  QKG+HL+
Sbjct:  141 PDVIHCHDWHSG-LTPTYVRAFAAAKQATPATVFTIHNLAYQGLFAAAEVTRLGLPKSWFD----IDGFEFFGKVSFMKAALRYADRITTVSPTYAREISSEAQGCGLDGLLRERANSLSGILNGVDDLIWNPATDALLPAPYDEHKLQGKTLAKRALQTKFGLEPR-ANALVFGAVSRLTEQKGLHLL 323          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHOCS (Glycogen synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 71/201 (35.32%), Postives = 100/201 (49.75%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+IIH HDWQT  V P Y      + G       FT HN  +QG  P   LA   L     +    +     H +I  LK  + +++ +TTVSP+YAQE++    G GL   L   ++   GILNG+D   WNPA+D  +  +Y+A  L+ +   K  +R   GL S     PL   ++RL  QKG+ L+  A+ R L  G
Sbjct:  147 PEIIHAHDWQTGLV-PAYLRFAAERTGAKRPVSVFTIHNLAFQGLVPPALLADLDLPPHSFS----IHGLEFHGKIGLLKAGLYYADKLTTVSPTYAQEIQGPAMGFGLDGLLRARARDLSGILNGVDLGLWNPASDPLIPARYDATLLEARQAAKAELRHAFGLGSV-PDGPLFAVVSRLTHQKGIDLVLEALPRLLALG 341          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BACCZ (Glycogen synthase OS=Bacillus cereus (strain ZK / E33L) GN=glgA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 64/191 (33.51%), Postives = 107/191 (56.02%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQL-NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            D++H HDW TA V  L  + Y    L    +  +T HN ++QG  P + +     D+ +L +     +    +  +N +KG I+ S+ +T VSP+Y +E++    G+ L   L  ++ K  GI+NGIDT  +NP TD+++  QY+A  L  K ENK +++++ GL   +   P++  +TRL  QKG+ L+R
Sbjct:  127 DVLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVYTIHNLQFQGVFPPEVM----YDLLELGDEYFHSEQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDAGSLYEKNENKRALQRYFGLPEKE-DTPIISMVTRLTKQKGLDLVR 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_SYNR3 (Glycogen synthase OS=Synechococcus sp. (strain RCC307) GN=glgA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.086e-26
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK--ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++HCHDW T  +    W    P+        FT HN +YQG    K   +  C         P  MQ +      + +  A+++++ V  VSP+YAQE+RT E G+ L   LN+ S K  GILNGID +AWNPATD+ +   Y+  DL GKA  K ++++ +GL   +    ++G ++RLV QKGV L+     R L
Sbjct:  122 PQVLHCHDWHTGMIP--VWMHQDPE----ISTVFTIHNLKYQGPWRWKLERMTWC---------PWYMQGD------HTMAAALLYADRVNAVSPTYAQEIRTPEYGEQLEGLLNYISGKLRGILNGIDVEAWNPATDSRIPATYSTADLSGKAVCKRALQERMGL-QVNPDTFVIGLVSRLVDQKGVDLLLQVAERFL 298          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_DESVV2.982e-2636.87Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]
GLGA_DESAA2.982e-2631.61Glycogen synthase OS=Desulfatibacillum alkenivoran... [more]
GLGA_BACCQ2.982e-2633.51Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_BACAN2.982e-2633.51Glycogen synthase OS=Bacillus anthracis GN=glgA PE... [more]
GLGA_ANATD2.982e-2636.82Glycogen synthase OS=Anaerocellum thermophilum (st... [more]
GLGA_YERPB3.894e-2633.66Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_RHOFD3.894e-2634.39Glycogen synthase OS=Rhodoferax ferrireducens (str... [more]
GLGA_RHOCS3.894e-2635.32Glycogen synthase OS=Rhodospirillum centenum (stra... [more]
GLGA_BACCZ3.894e-2633.51Glycogen synthase OS=Bacillus cereus (strain ZK / ... [more]
GLGA_SYNR35.086e-2636.68Glycogen synthase OS=Synechococcus sp. (strain RCC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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