CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 73/195 (37.44%), Postives = 101/195 (51.79%), Query Frame = 3
Query:   21 HDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD-------RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            +DW  + V  L    Y P G+   +R     HN  +QG  PA      GL  +     +       R       + +N LKGA+V ++ + TVS  Y+ EV T+EGGQGL+  L+       GI+NGID + WNP TD  L   Y+ +DL GKA+ K  ++K LGL   +   PL+G I RL  QKG+ LI+ AI
Sbjct:  283 NDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQKELGLPVRE-DVPLIGFIGRLDYQKGIDLIKMAI 476          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PARDP (Glycogen synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 76/200 (38.00%), Postives = 103/200 (51.50%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P ++H HDWQ A + P+Y       G+   R   T HN  +QG APA  L++  L     N P   +      RI+ LK  IVF++ V+TVSP+YA+E+ T E G G+   L   +  F GILNGID DAW P   T           QGKA ++ ++RK  GL   D   PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  132 PQVLHLHDWQ-AGLTPIYLR---QAGVRDVRTLLTIHNIAFQGLAPAHMLSALQLPAHLFN-PSGFE---YWGRISALKAGIVFADKVSTVSPTYAEELMTPEFGMGMEGVLADRAGDFTGILNGIDLDAWKPPYAT----------PQGKAPHRAALRKEFGLPETDG--PLCVVVSRLTGQKGLDLLIEALPALLENG 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_NATTJ (Glycogen synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE----NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTILYFL 623
            PDIIH +DW TA V+PL    Y  K   N  +   T HN +YQG      L     D+         +    H +I+ LKG ++FS+ +TTVSP+YA+E+++ E G G+   L+       GILNGID   +NP TD  +   YN  D +GK      NK  +++ L L    +R PL+  I RLV QKG+ LI + +   L +      FL
Sbjct:  127 PDIIHLNDWHTAMVSPLLKYKYAHKTNYNQMKTILTIHNLKYQGIFTPHVLEDF-FDLHDHKLQHDPEYLEYHGQISFLKGGLIFSDAITTVSPTYAKEIQSPELGMGVDGLLHKRRDDLYGILNGIDYQDYNPKTDVNIYRNYNLPD-EGKTNEKLINKLRLQEDLRL-PVSSRVPLIAFINRLVKQKGLDLITYVLPELLESEEVQFVFL 335          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_LACLA (Glycogen synthase OS=Lactococcus lactis subsp. lactis GN=glgA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 70/200 (35.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHD-RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H +DWQTA V  L  + Y   K     +   T HN E+QG      L+   G+ +++       +    H+  +N LK  I++++ V TVSP+YA+E++TSE G GL S L +   K  GILNGID D +NP  D  +   ++  +L GK + K  ++K  GL   +   PL+G ++RL  QKG  L+   + + L
Sbjct:  129 PDVLHVNDWQTAMVPFLLKEKYNWIKAYEKIKTVLTIHNIEFQGLMHGDALSELFGMGMERY-----FEGVVRHNGMLNMLKTGILYADRVNTVSPTYAKEIQTSEFGCGLESILQYVDGKVSGILNGIDYDIYNPENDILIPYHFSEEELSGKGQMKAELQKRTGL-PLNPNVPLIGMVSRLTNQKGFDLVLSQLEKVL 322          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_EXIS2 (Glycogen synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 71/197 (36.04%), Postives = 105/197 (53.30%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVP--KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR-INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-QGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PD+IHCHDWQT  V P +  ++          +  FT HN +YQG  P + L     D+  L+      +  AH+  +N +K  +V +N +TTVSPSY  E+     G+ L   L   +    GILNGID   ++P TD  L   Y+   + +GKA NK ++++ LGL   +   PL G ++RLV QKG+ L+ H +
Sbjct:  129 PDVIHCHDWQTG-VLPAFLRIHYQHLNRYQEIKTVFTIHNLQYQGVFPEEVLG----DLLGLSHEHFTAEGIAHNGLVNYMKAGLVHANQITTVSPSYRDEIMDPYYGETLEPVLQHRAVDVRGILNGIDYRQFSPETDEHLVENYDVKTVEEGKAANKAALQQELGL-PVNPDVPLFGFVSRLVDQKGIDLLAHIL 319          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 67/191 (35.08%), Postives = 103/191 (53.93%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNA-NDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDIIHCHDWQT  V     D +      +  +   T HN ++QG    K +       +    PD+++    +   N LKG IVFS+ +TTVS +YA ++     G+GL   +   S    GI+NGID + +NP  D F+   YNA N  + K +NK ++++ LGL+  D +  ++G ++RL+ Q G+ LI
Sbjct:  128 PDIIHCHDWQTGLVPVFLHDSFQKNEFYHGIKTIMTIHNLKFQGVWDKKTVQDITALSEYYFSPDKLE---TYGDANYLKGGIVFSDYITTVSDTYAHDITMPFYGEGLDGLMRARSDCLCGIVNGIDYEEYNPEFDPFINKPYNAKNFRKEKIKNKRALQQELGLAK-DDKAFMIGIVSRLIDQNGLDLI 314          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 72/204 (35.29%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSA-DARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            P ++H +DWQT  +AP Y   + P         FT HN  YQG  P   +   G   +       M     +D ++ LK  + +S+ +TTVSP YA+E++T   G G+   L   +    GILNG D + WNPA DT L   +   D  GKA NK +++  LGLS A DA  PL+  ++RL   KG+ L+  A+   L  G  +
Sbjct:  136 PQVLHANDWQTG-LAPAYLHAWSPA--QRPATVFTIHNIAYQGQFPRDLVPRLGFPPEMY----AMDGFEYYDTLSFLKSGLFYSDRITTVSPRYAKEIQTPAFGCGMEGLLAHRAADLTGILNGADYEVWNPAADTHLDHAFTPGDAAGKACNKAALQAELGLSQAPDA--PLMVIVSRLNDHKGMDLVLAALPNILKMGAQV 330          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PROMT (Glycogen synthase OS=Prochlorococcus marinus (strain NATL2A) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK--ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++HCHDW T  +    W    P+        FT HN +YQG    K  ++  C         P  M  +      + +  A+++++ V  VSP+Y++E+RTSE G+ L   LN+ S K  GILNG+D D WNPATD  L  +++ +++ G+A NK  +++ +GL   +  K L+G + RLV QKG+ L+     R L
Sbjct:  122 PQVLHCHDWHTGMIP--VWMHQDPE----ISTVFTIHNLKYQGPWRWKLDQITWC---------PWYMHGD------HTMASAMLYADRVNAVSPTYSREIRTSEYGEKLEGLLNYISGKLRGILNGVDLDEWNPATDNSLPAKFSVDNISGRAINKRVLQERMGL-EVNPDKYLMGMVGRLVDQKGIDLLLQVANRLL 298          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PROMS (Glycogen synthase OS=Prochlorococcus marinus (strain AS9601) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK--ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++HCHDW T  +    W    P+        FT HN +YQG    K  ++  C         P  M  +      + +  A+++++ V  VSP+YA E++T E G+ L   LN+ S K  GILNGID D WNPA D  L  +++  +L+ + ENK+ +++ +GL   +++K L+G ++RLV QKGV L+     R L
Sbjct:  122 PQVLHCHDWHTGMIP--VWMHQDPE----ISTVFTIHNLKYQGPWRWKLEKMTWC---------PWYMHGD------HTMAAAMLYADRVNAVSPTYADEIKTHEYGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSIKNLENRLENKKILQREMGL-EVNSKKYLLGMVSRLVDQKGVDLLLQVSRRLL 298          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PROM2 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK--ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++HCHDW T  +    W    P+        FT HN +YQG    K  ++  C         P  M  +      + +  A+++++ V  VSP+YA E++T E G+ L   LN+ S K  GILNGID D WNPA D  L  +++  +L+ + ENK+ +++ +GL   +++K L+G ++RLV QKGV L+     R L
Sbjct:  122 PQVLHCHDWHTGMIP--VWMHQDPE----ISTVFTIHNLKYQGPWRWKLEKMTWC---------PWYMHGD------HTMAAAMLYADRVNAVSPTYADEIKTHEYGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSIKNLENRLENKKILQREMGL-EVNSKKYLLGMVSRLVDQKGVDLLLQVSRRLL 298          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SSY1_WHEAT1.480e-2537.44Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_PARDP1.480e-2538.00Glycogen synthase OS=Paracoccus denitrificans (str... [more]
GLGA_NATTJ1.480e-2536.32Glycogen synthase OS=Natranaerobius thermophilus (... [more]
GLGA_LACLA1.480e-2535.00Glycogen synthase OS=Lactococcus lactis subsp. lac... [more]
GLGA_EXIS21.480e-2536.04Glycogen synthase OS=Exiguobacterium sibiricum (st... [more]
GLGA_CLOPH1.480e-2535.08Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA_MAGSA1.933e-2535.29Glycogen synthase OS=Magnetospirillum magneticum (... [more]
GLGA_PROMT2.524e-2534.67Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PROMS2.524e-2534.67Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PROM22.524e-2534.67Glycogen synthase OS=Prochlorococcus marinus (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
back to top