CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 80/194 (41.24%), Postives = 112/194 (57.73%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H +DWQTA +      +Y   P    +A V  T HN  YQG    K L+  GL       PD +        + ++N LKG IVFS+++ TVSP+YA+E++T E G+ L   L   SK   GILNGID + +NPATD ++ V Y+ N L+ K ENK  +++ LGL   +    + G I+RLVPQKG+ L+
Sbjct:  132 PDIVHVNDWQTALIPVYLKTVYRDDPYFSRTATV-LTIHNLGYQGVFDPKYLSFAGL-------PDYVYTIDGLEFYGQLNFLKGGIVFSDVINTVSPTYAEEIQTEEYGEKLDGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNRLELKWENKVKLQEELGL-PVNKETAVAGLISRLVPQKGLDLL 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            P I+H +DWQT  V  L    +     L  AR  FT HN  YQG      + + GL         R +    HD++N LK  +VF++ +TTVSP+YA+E+ T +GG GL + L   ++   GILNGID + W+PATD  L  +Y+A DL GKA  K ++++ LGL       PLV  I RL  QKG+ L+  A+
Sbjct:  126 PHIVHLNDWQTGLVPFLLRREHARDAALAGARTVFTIHNLAYQGVFSKHVVPALGLPWDVF----RYEAMEFHDQLNFLKAGLVFADALTTVSPTYAREIATPQGGVGLDALLRHRARDLHGILNGIDVEEWDPATDRHLPARYSAADLSGKAACKSALQRELGLPER-PDVPLVAMIGRLAEQKGLDLVVAAL 314          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 78/193 (40.41%), Postives = 103/193 (53.37%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            DI+H HDWQT  V      LY      N     FT HN  YQG      +   GL     N    +     + +IN LKG I+FS+IVTTVSP+YAQE++T + G+ L   L   ++   GILNGID   +NPATD  + V Y+ + ++ K  NK  ++K L L   D   PL+G I RLV QKG+ LI   +
Sbjct:  133 DIVHAHDWQTGLVPVYLKTLYRTDPFFNRTATVFTIHNLGYQGVFNPGYMKFAGLPAYLFN----IDGLEFYGQINFLKGGILFSDIVTTVSPTYAQEIQTEQFGEKLDGVLRLRAEDLYGILNGIDYSEYNPATDKRIYVNYDIDHIEKKKMNKSELQKELNLQVRD-DVPLIGMINRLVDQKGLDLIEKIV 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYN-ANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            PD++H HDWQT  V P Y + +   G       F+ HN EY+G    + L   GL   Q +    +     H  ++ LK  IV++  V TVSPSYA E++T  GGQGL   L   +    GILNGID++AWNP TD +L    + A+   GK  NK+ +++ +GL  AD  +PL G ++R V QKG+ L+  A+   +  G  +
Sbjct:  135 PDVLHGHDWQTGLV-PAYLNAW---GARRPPFLFSIHNMEYRGLFGPEILDLIGLPRSQFS----INGLEFHGLVSTLKAGIVYAQAVATVSPSYAAEIKTPVGGQGLEGLLQARAGDLSGILNGIDSNAWNPQTDPYLAAPIDGADPAPGKRINKDMLKRRMGL-DADGDRPLFGLVSRFVAQKGIDLVVAALPGMIAGGAQV 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC--FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTILYFLVQAQCRIFRENS 659
            PD+IHCHDWQTA + P+   L        AR    FT HN  YQG  PA  +A  GL    L   + ++    + ++N +KGAI+ ++++TTVS +Y +E+ T   G GL   L        GI+NGIDTD WNPA D  +   Y+A  L GKA +K  +++ LG+ +A +  PL+G ++RL  QKG+ L+   + R   +    +       C + R NS
Sbjct:  131 PDVIHCHDWQTALI-PIILRLEAADDPFFARTATVFTIHNLAYQGLFPAPAIAETGLP-SALFTTEWLE---YYGQLNLMKGAILTADLITTVSETYRREIMTPTQGCGLEGVLARRGDDLFGIVNGIDTDEWNPAADKRIFRNYSARALAGKAADKLELQRELGMPAAPS-VPLIGMVSRLAEQKGIDLVLELLPRLAESELQFVLLGTGNACYLERLNS 345          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_AQUAE (Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 71/188 (37.77%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            D++H +DWQTA +     +++        +  FT HN  YQG  P + +   G+     +    M+       +N +KG IVFS+++TTVSP+YA+E++T E G GL   L  +S K  GILNGID + WNP  D ++   Y+  +   K +NKE + K LG+   +A KPL+  I R   QKGV LI
Sbjct:  126 DVVHANDWQTALIPLFLKEVFK----TPVKTVFTIHNLAYQGLFPKETVERVGIPPYLFH----MEAVEFWGLVNFMKGGIVFSDLITTVSPTYAKEIQTQEYGYGLEGVLKKYSYKLRGILNGIDYEVWNPEKDKYIYQNYSLRNYSKKFKNKEFLSKELGI---EAEKPLISFINRFTHQKGVELI 302          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRA5 (Glycogen synthase OS=Streptococcus agalactiae serotype V GN=glgA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++H HD+ TA +  L  + Y   +  N+ R  FT HN E+QG    + L    G+  ++        +N     +N +K AI++S+ VTTVSPSYA E++T E G+GL   +   + K  GI+NGID+D  NP TD FL   ++ ++L+GK +NK +++++LGL   D   PL+G ++RL  QKG  +I
Sbjct:  126 PDVLHVHDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAERYEDGTLRWNNC----LNWMKAAILYSDRVTTVSPSYANEIKTPEFGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSNLEGKIKNKLALQENLGLPQ-DKNVPLIGIVSRLTDQKGFDII 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRA3 (Glycogen synthase OS=Streptococcus agalactiae serotype III GN=glgA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++H HD+ TA +  L  + Y   +  N+ R  FT HN E+QG    + L    G+  ++        +N     +N +K AI++S+ VTTVSPSYA E++T E G+GL   +   + K  GI+NGID+D  NP TD FL   ++ ++L+GK +NK +++++LGL   D   PL+G ++RL  QKG  +I
Sbjct:  126 PDVLHVHDYHTAMIPFLLKEKYHWIQAYNNIRTVFTIHNIEFQGQFGPEMLGDLFGVGAERYEDGTLRWNNC----LNWMKAAILYSDRVTTVSPSYANEIKTPEFGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSNLEGKIKNKLALQENLGLPQ-DKNVPLIGIVSRLTDQKGFDII 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRA1 (Glycogen synthase OS=Streptococcus agalactiae serotype Ia GN=glgA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++H HD+ TA +  L  + Y   +  N+ R  FT HN E+QG    + L    G+  ++        +N     +N +K AI++S+ VTTVSPSYA E++T E G+GL   +   + K  GI+NGID+D  NP TD FL   ++ ++L+GK +NK +++++LGL   D   PL+G ++RL  QKG  +I
Sbjct:  126 PDVLHVHDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAERYEDGTLRWNNC----LNWMKAAILYSDRVTTVSPSYANEIKTPEFGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSNLEGKIKNKLALQENLGLPQ-DKNVPLIGIVSRLTDQKGFDII 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 75/192 (39.06%), Postives = 105/192 (54.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++HC+DWQT  + PL  D       N   V FT HN  YQG  P +         Q+L  P R+    A   + +++ +KG +VF++ + TVSPSYA+E++T E G GL   L        GILNGID  AWNPATD +L   Y  + L+ K  N+  +R+  GL   D    ++G + R+V QKGV L+
Sbjct:  132 PDVVHCNDWQTGLIPPLLSD-----EPNRPAVVFTVHNLAYQGLFPYETF-------QRLALPPRLWKMEALEFYGQLSFIKGGLVFADRINTVSPSYAEEIQTPEFGCGLDGLLRSRKSCLSGILNGIDDVAWNPATDPYLPAPYGPDTLERKKVNRTVLRQRYGLPD-DPEVAVLGMVGRMVEQKGVDLL 310          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_THEMA8.957e-3141.24Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_ANADF8.957e-3140.21Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_THELT1.528e-3040.41Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
GLGA_RHORT1.528e-3037.75Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA2_GEOSL1.995e-3036.65Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA_AQUAE5.806e-3037.77Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3... [more]
GLGA_STRA59.903e-3038.22Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA39.903e-3038.22Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA19.903e-3038.22Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA1_METCA9.903e-3039.06Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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