CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECOHS (Glycogen synthase OS=Escherichia coli O9:H4 (strain HS) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECODH (Glycogen synthase OS=Escherichia coli (strain K12 / DH10B) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECOBW (Glycogen synthase OS=Escherichia coli (strain K12 / BW2952) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO8A (Glycogen synthase OS=Escherichia coli O8 (strain IAI1) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO81 (Glycogen synthase OS=Escherichia coli O81 (strain ED1a) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO7I (Glycogen synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO5E (Glycogen synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO57 (Glycogen synthase OS=Escherichia coli O157:H7 GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO55 (Glycogen synthase OS=Escherichia coli (strain 55989 / EAEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
[Close]
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ECO45 (Glycogen synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 3 
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L     N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_ECOHS1.296e-2132.18Glycogen synthase OS=Escherichia coli O9:H4 (strai... [more]
GLGA_ECODH1.296e-2132.18Glycogen synthase OS=Escherichia coli (strain K12 ... [more]
GLGA_ECOBW1.296e-2132.18Glycogen synthase OS=Escherichia coli (strain K12 ... [more]
GLGA_ECO8A1.296e-2132.18Glycogen synthase OS=Escherichia coli O8 (strain I... [more]
GLGA_ECO811.296e-2132.18Glycogen synthase OS=Escherichia coli O81 (strain ... [more]
GLGA_ECO7I1.296e-2132.18Glycogen synthase OS=Escherichia coli O7:K1 (strai... [more]
GLGA_ECO5E1.296e-2132.18Glycogen synthase OS=Escherichia coli O157:H7 (str... [more]
GLGA_ECO571.296e-2132.18Glycogen synthase OS=Escherichia coli O157:H7 GN=g... [more]
GLGA_ECO551.296e-2132.18Glycogen synthase OS=Escherichia coli (strain 5598... [more]
GLGA_ECO451.296e-2132.18Glycogen synthase OS=Escherichia coli O45:K1 (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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