CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_LACCB (Glycogen synthase OS=Lactobacillus casei (strain BL23) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PD+IH +DW TAF+  L  + Y   K     +   T HN ++QG  P   LA+  G+  +  N     QD S    IN LKG I ++++V+TVSPSYA+E++T   G+ L  TL   S K VGILNGID++ +NPATD  L   Y+A +L GKA++K++++  + L       PL   ++RL  QKG  L+  A+
Sbjct:  128 PDVIHANDWHTAFIPVLLKEKYGWIKPYQQIKTQLTIHNLQFQGWFPPSTLATVFGIGREGFNDDGFGQDGS----INWLKGGINYADLVSTVSPSYAKEIQTPAFGEHLDGTLRKQSGKLVGILNGIDSEVYNPATDQNLAYNYDAKNLAGKAKDKKALQDEMHLPK--RTDPLFAMVSRLTRQKGADLLVDAL 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_LACC3 (Glycogen synthase OS=Lactobacillus casei (strain ATCC 334) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PD+IH +DW TAF+  L  + Y   K     +   T HN ++QG  P   LA+  G+  +  N     QD S    IN LKG I ++++V+TVSPSYA+E++T   G+ L  TL   S K VGILNGID++ +NPATD  L   Y+A +L GKA++K++++  + L       PL   ++RL  QKG  L+  A+
Sbjct:  128 PDVIHANDWHTAFIPVLLKEKYGWIKPYQQIKTQLTIHNLQFQGWFPPSTLATVFGIGREGFNDDGFGQDGS----INWLKGGINYADLVSTVSPSYAKEIQTPAFGEHLDGTLRKQSGKLVGILNGIDSEVYNPATDQNLAYNYDAKNLAGKAKDKKALQDEMHLPK--RTDPLFAMVSRLTRQKGADLLVDAL 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRE4 (Glycogen synthase OS=Streptococcus equi subsp. equi (strain 4047) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H HD+ TA +  L  + Y   +   + R  FT HN  +QG      L     DV      +R +D +   HD +N +K A+++++ VTTVSPSYA E++T   GQGL   +   + K  GI+NGIDTD +NPA D  L   ++A DL GKA  K+++++ LGL    A  PL+G ++RL  QKG  L+
Sbjct:  126 PDILHVHDYHTAMIPFLLKEKYHWIQAYQAIRTVFTIHNIAFQGQFDPGMLGDL-FDVGI----ERYEDGTLRWHDCLNWMKAAVLYADRVTTVSPSYAHEIQTPAFGQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAEDLSGKAATKQALQERLGL-PVRADVPLIGMVSRLTDQKGFQLV 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 73/193 (37.82%), Postives = 107/193 (55.44%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            D++H +DWQT+ +      LY      +  V   T HN  YQG   +K +   GL     N    +     + +IN LKG I++S+I+ TVSP+YA E++T E G+ L   L   S    G+LNGID D +NP TD  + V Y+ +++  K ENK  ++K LGL   D R P++G ITRLV QKG+ ++   +
Sbjct:  129 DVLHVNDWQTSLIPVYLKTLYKEDEFYAKTVTLLTIHNLGYQGIFDSKYMEFSGLPNYLYN----IDGIEFYGKINFLKGGILYSDIINTVSPTYANEIQTKEYGEKLDGVLRLRSADLYGVLNGIDYDEYNPETDKRIFVNYSLDNIDKKYENKVRLQKELGLPE-DRRIPMIGMITRLVDQKGLDILSEVL 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 77/204 (37.75%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTIL 614
            PD++HC+DWQ A +APL   ++  +        FT HN  YQG  P     +  L  Q  +     Q    H +++ +KG I F++ +TTVSPSYA+E+ T + G GL   LN  +    GILNG+D   W+P  D  L  +Y+A+DL GKA  K +++ H  L    +  PL+G + R+V QKGV L+  A    L AG   L
Sbjct:  136 PDVVHCNDWQ-AGLAPLMLSMHESR----PATVFTIHNLAYQGLFPRHAFDALNLPPQLWH----YQGLEFHGKLSFIKGGIGFADHITTVSPSYAREILTPQQGFGLDGLLNHRAGVLTGILNGVDYREWDPGKDRHLVARYSADDLSGKARCKAALQHHFKL-PCHSGIPLLGHVGRMVAQKGVDLLLKAAEPLLAAGEAQL 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRS7 (Glycogen synthase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 75/193 (38.86%), Postives = 109/193 (56.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H HD+ TA +  L  + Y   +   + R  FT HN  +QG      L    G+ +       R +D +   HD +N +K A+++++ VTTVSPSYA E++T   GQGL   +   + K  GI+NGIDTD +NPA D  L   ++A DL GKA  K+ +++ LGL    A  PL+G ++RL  QKG  L+
Sbjct:  126 PDILHVHDYHTAMIPFLLKEKYHWIQAYQAIRTVFTIHNIAFQGQFDPGMLGDLFGVGI------GRYEDGTLRWHDCLNWMKAAVLYADRVTTVSPSYAHEIQTPAFGQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAEDLSGKAATKQVLQERLGL-PVRADVPLIGMVSRLTDQKGFQLV 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+HC+DWQT  + P    L+  +        FT HN  Y+G    +          +LN P     +     + +++ +KG + F++ +TTVSPSYAQE++  E G GL   + +  +   GILNGIDTD WNP  D  L   YN   L  K +NK ++++ LGL + +A  PL+G I RLV QKG+ LI
Sbjct:  136 PDIVHCNDWQTGLI-PALLSLHPER----PATLFTIHNLAYRGLFSYQAFG-------ELNLPPAFWHHERLEFYGQMSFMKGGLAFADFITTVSPSYAQEIQLPEHGYGLDGLIRYRQESLSGILNGIDTDEWNPGKDKHLAATYNRRTLGNKTKNKLALQETLGL-ALNADVPLLGFIGRLVDQKGIDLI 314          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            DI+HC+DW TA +AP Y  L +P    +A      HN  +QG  P       GL  + L    + +      +++ LK  + +++ +  VSP+YA+E+RT   G G+   L   + +  GILNGID DAWNP TD  L   Y+A+ L+ KA NK +++  LGL +AD    L+G +TRL  QKG+ L+  A+
Sbjct:  144 DILHCNDWPTA-LAPAYLKLGLP---GAAPSLIVVHNLAFQGIFPLDVAERLGLPPESL----KSEGVEYWGKLSFLKAGLYYADRIVAVSPTYAREIRTEAHGCGMQGLLETRANRLAGILNGIDMDAWNPRTDPHLDTNYDADTLEDKAPNKRALQAELGL-AADDDALLLGMVTRLTDQKGIDLVLDAL 326          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRMU (Glycogen synthase OS=Streptococcus mutans GN=glgA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 74/195 (37.95%), Postives = 114/195 (58.46%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGT---APAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H HD+ TA +  L  + Y      +  +  FT HN E+QG    +   EL   G         +R +D +   +D +N +K A+++++ VTTVSPSYA+E+ T E G+GL   +   S K  G++NGIDTD ++P TD  L V ++ +DL GKA+NK ++++ +GL   +   PLVG ++RL  QKG  L+
Sbjct:  126 PDILHVHDYHTAMIPYLLKEKYHWINAYHGIKTVFTIHNIEFQGQFNPSMLGELFGVG--------DERYRDGTLRWNDCLNWMKAAVLYADRVTTVSPSYAKEIMTPEFGKGLDQIMRMESGKLSGVVNGIDTDLFDPETDPHLAVHFSKDDLSGKAKNKAALQERVGLPVRE-DVPLVGIVSRLTDQKGFQLV 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_HYDS0 (Glycogen synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 83/207 (40.10%), Postives = 117/207 (56.52%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFV-GILNGIDTDAWNPATDTFLKVQYNANDLQ-GKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTILY 617
            PDIIH HDW TA VA +Y DLY  K L+      T HN  +QG      L   G+     N     +D   ++++N LKG IV S+++TTVS ++A+E++T+ G  GL   L    K++V GILNGIDT++WNPATD  L   Y+ N  + GK +NK  +++  GL +   R PL   I RL  QKG+ LI  A+   +  G   ++
Sbjct:  128 PDIIHIHDWHTALVA-VYKDLYF-KHLDETATVLTIHNIAFQGIFLGHILPQIGIPWGLFNP----EDLEFYNQVNFLKGGIVHSDVITTVSKTHAKEIQTNMGF-GLEGVLR--EKRYVFGILNGIDTESWNPATDKSLYQNYDINTFKAGKEKNKMYVKELFGLETPHTR-PLAAFIARLAKQKGLDLIEKAVDDAVKIGYDFIF 324          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_LACCB1.293e-2940.00Glycogen synthase OS=Lactobacillus casei (strain B... [more]
GLGA_LACC31.293e-2940.00Glycogen synthase OS=Lactobacillus casei (strain A... [more]
GLGA_STRE41.689e-2939.58Glycogen synthase OS=Streptococcus equi subsp. equ... [more]
GLGA_THEM42.881e-2937.82Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
GLGA_THISH4.915e-2937.75Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]
GLGA_STRS74.915e-2938.86Glycogen synthase OS=Streptococcus equi subsp. zoo... [more]
GLGA_CELJU6.419e-2938.02Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_AZOSE6.419e-2937.50Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_STRMU8.384e-2937.95Glycogen synthase OS=Streptococcus mutans GN=glgA ... [more]
GLGA_HYDS08.384e-2940.10Glycogen synthase OS=Hydrogenobaculum sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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