CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKK--FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            P ++H +DW  A  A      YV     +     T HN  YQG  P    A+ G+  +      R+ +   + +++ L+G IV ++ V TVS SYA+++     G GL   L   + K    GI+NGID  +W+P TD +L   ++ N  QG+  N   +RK  GL   ++  PL   ++RLV QKG+ LI     + + AG  I
Sbjct:  165 PRLLHLNDWPCALAAG-----YVRWSGGTTPCLLTIHNLAYQGLVPYSMAAALGIPAE------RVAELEFYGQMSFLRGGIVNADHVNTVSVSYAKQITGPAQGCGLDRLLAGRAAKGALTGIVNGIDA-SWDPRTDEYLDSHFSVNQWQGRQANAAQVRKAFGL--RESTGPLFAVVSRLVHQKGLDLICEVAPQIVAAGGQI 355          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKK--FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            P ++H +DW  A  A      YV     +     T HN  YQG  P    A+ G+  +      R+ +   + +++ L+G IV ++ V TVS SYA+++     G GL   L   + K    GI+NGID  +W+P TD +L   ++ N  QG+  N   +RK  GL   ++  PL   ++RLV QKG+ LI     + + AG  I
Sbjct:  130 PRLLHLNDWPCALAAG-----YVRWSGGTTPCLLTIHNLAYQGLVPYSMAAALGIPAE------RVAELEFYGQMSFLRGGIVNADHVNTVSVSYAKQITGPAQGCGLDRLLAGRAAKGALTGIVNGIDA-SWDPRTDQYLDSHFSVNQWQGRQANAAQVRKAFGL--RESAGPLFAVVSRLVHQKGLDLICEVAPQIVAAGGQI 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_RHIME (Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 61/205 (29.76%), Postives = 98/205 (47.80%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTIL 614
            P IIH HDW  A        LY+   G ++     T HN  +QG  PA      GL  +  +    +     +  I  LKG +  ++ +T VSP+YA+E+ +   G GL   +N      VGI+NGID + W+P++D  ++  Y+A     +  N++ + +H GL   D   P+   + RL  QKG+ L+       +  G T++
Sbjct:  131 PHIIHAHDWHAAMSL-----LYLKYAGDDTIPRVLTVHNLAFQGQFPAHYFPELGLPAEAYS----IDGVEYYGDIGFLKGGLQAADAITVVSPTYAREIMSPAFGMGLEGVMNERHADVVGIVNGIDLEVWDPSSDPCIEHHYSARVPLRRLPNRQVLLRHFGL--PDTCGPIFASVNRLTWQKGMDLLAATAGEIVKNGGTLI 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 65/205 (31.71%), Postives = 101/205 (49.27%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKK--FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            P ++H +DW  A  A      YV     +     T HN  YQG  P     + G+  +      R+ +   + +++ L+G IV ++ V TVS SYA+++     G GL   L   + K    GI+NGID  +W+P TD +L   ++ N  QG+ +N   +RK  GL   ++  PL   ++RLV QKG+ LI     + + AG  I
Sbjct:  165 PRLLHLNDWPCALAAG-----YVRWSGGTTPCLLTIHNLAYQGLVPYSMAGALGIPAE------RVAELEFYGQMSFLRGGIVNADHVNTVSVSYAKQITGPAQGCGLDRLLAGRAAKGALTGIVNGIDA-SWDPRTDEYLDSHFSVNQWQGRQDNAAQVRKAFGL--RESTGPLFAVVSRLVHQKGLDLICEVAPQIVAAGGQI 355          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 65/205 (31.71%), Postives = 101/205 (49.27%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKK--FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTI 611
            P ++H +DW  A  A      YV     +     T HN  YQG  P     + G+  +      R+ +   + +++ L+G IV ++ V TVS SYA+++     G GL   L   + K    GI+NGID  +W+P TD +L   ++ N  QG+ +N   +RK  GL   ++  PL   ++RLV QKG+ LI     + + AG  I
Sbjct:  165 PRLLHLNDWPCALAAG-----YVRWSGGTTPCLLTIHNLAYQGLVPYSMAGALGIPAE------RVAELEFYGQMSFLRGGIVNADHVNTVSVSYAKQITGPAQGCGLDRLLAGRAAKGALTGIVNGIDA-SWDPRTDEYLDSHFSVNQWQGRQDNAAQVRKAFGL--RESTGPLFAVVSRLVHQKGLDLICEVAPQIVAAGGQI 355          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_HAEIN (Glycogen synthase OS=Haemophilus influenzae GN=glgA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 61/191 (31.94%), Postives = 92/191 (48.17%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE---GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            +++H HDW         ++   P     A+  FT HN  YQG      L   GL     +    ++      +I+ LK  + +S+  T VSP+YAQE+ T E   G QGL S L    +  VGILNG+D + W+P  D ++   Y    + GK +NK  ++ +  L   ++    V  +TRL  QKGV L+
Sbjct:  131 EVVHAHDWHAGLCVAYLFNKGKP-----AKSVFTIHNLAYQGQFSYHHLYEIGLPTGMFH----VEGLELFGQISYLKSGLFYSDASTAVSPTYAQEITTPEFAYGLQGLLSGLKAQGR-LVGILNGVDENIWHPNVDQYIPHHYKLKYMAGKKKNKAELQAYFNLPQDESALAFV-MVTRLTEQKGVDLL 310          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_HAEI8 (Glycogen synthase OS=Haemophilus influenzae (strain 86-028NP) GN=glgA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE---GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            +++H HDW     A   ++   P     A+  FT HN  YQG      L   GL     +    ++      +I+ LK  + +S+  T VSP+YA+E+ T E   G QGL S L    +  VGILNG+D + W+P  D ++   Y    + GK +NK  ++ +  L   ++    V  +TRL  QKGV L+
Sbjct:  131 EVVHAHDWHAGLCAAYLFNKGRP-----AKSVFTIHNLAYQGQFSYHHLYEIGLPTGMFH----VEGLELFGQISYLKSGLFYSDASTAVSPTYAEEITTPEFAYGLQGLLSGLKAQGR-LVGILNGVDENIWHPNVDQYIPHHYKLKYMAGKKKNKAELQAYFNLPQDESALAFV-MVTRLTEQKGVDLL 310          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_AERS4 (Glycogen synthase OS=Aeromonas salmonicida (strain A449) GN=glgA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 57/190 (30.00%), Postives = 95/190 (50.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            P+I+HC+DW T  +  L    +         R   + HN  +QG    ++  +     +  +   R+  +  H  +N LK  +++++ +  VSP+YA E+ T  G  G+ +     +    GILNG D   W+PA D FL   Y+ ++L GK   K+++++  GL   D   P+ G + RL  QKGVHL+
Sbjct:  136 PEIVHCNDWHTGLLPLLLKTRHAHNPFFQHTRSVISIHNAAFQGVFGREQFWAMP---EIADYEQRISYDYGH--VNLLKCGVLYADKINAVSPNYASELLTHLGAHGMANIFQQRAADLRGILNGCDYKDWDPAFDDFLPATYDVDNLAGKRVCKQTLQQEAGLPVTDL--PIYGMVCRLTEQKGVHLL 318          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 64/194 (32.99%), Postives = 93/194 (47.94%), Query Frame = 3
Query:   21 HDWQTAFVAPLYWDLYVPKG--LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-----QGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            +DW TA + P+Y   Y      +   R     HN  +QG  P  + A+  L    ++   R+ D    +  N     +  ++   TVS  Y  E++T +GG GLH  +N +  K  GI+NGID   WNP  D  L+    AN        GK + KE++++ LGL   D   PL+G I RL  QKGV +I  A+
Sbjct:  340 NDWHTALL-PVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDH-FRLYDPVGGEHSNVFAAGLKMADRAVTVSHGYLWEIKTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQVRD-DVPLIGFIGRLDHQKGVDIIGDAM 530          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PSEPF (Glycogen synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=glgA PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKK--FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 566
            PD++H HDW  A +AP Y      +G  +  + FT HN  YQG          G+    L +    +    + +++ LK  + +S+ +TTVS +YAQE+ T + G GL   L   +++    GI NGID ++W+ ATD  L   +   D +GKA N   +R+  GL   D+  PL   ++RLV QKG+ L
Sbjct:  141 PDLVHAHDWP-AGLAPAYMHW---RGQRTPTL-FTIHNLAYQGVTSLGSCPELGIPAHALQQ----EGMEFYGKMSFLKAGMAYSSHITTVSATYAQEITTPDFGCGLDGFLAAKTQQGLLSGIPNGID-ESWDAATDPHLFAPFAIGDWEGKAINAAHVRELFGLK--DSEGPLFAVVSRLVYQKGLDL 318          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_XANC51.585e-1932.20Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]
GLGA_XANAC1.585e-1932.20Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
GLGA2_RHIME1.585e-1929.76Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2... [more]
GLGA_XANOR2.070e-1931.71Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM2.070e-1931.71Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_HAEIN2.070e-1931.94Glycogen synthase OS=Haemophilus influenzae GN=glg... [more]
GLGA_HAEI82.070e-1931.94Glycogen synthase OS=Haemophilus influenzae (strai... [more]
GLGA_AERS42.070e-1930.00Glycogen synthase OS=Aeromonas salmonicida (strain... [more]
SSY22_ORYSJ2.703e-1932.99Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_PSEPF2.703e-1934.21Glycogen synthase OS=Pseudomonas fluorescens (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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