CF417459
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17 Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 3 Query: 18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 C+DW T +A + Y P G+ +A+V F HN YQG + D +LN +R + + +D +IN +K I+ ++ V TVSP YA+E+ S +G GI+NG+D W+P+ D ++ +Y+A ++ KA NKE+++ GL D + PL+ I RL QKG ++ AI Sbjct: 232 CNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVMAAAI 422
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17 Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 3 Query: 18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 C+DW T +A + Y P G+ +A+V F HN YQG + D +LN +R + + +D +IN +K I+ ++ V TVSP YA+E+ S +G GI+NG+D W+P+ D ++ +Y+A ++ KA NKE+++ GL D + PL+ I RL QKG ++ AI Sbjct: 232 CNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVMAAAI 422
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CHLCH (Glycogen synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=glgA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17 Identity = 63/206 (30.58%), Postives = 97/206 (47.09%), Query Frame = 3 Query: 3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD--NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR--TSE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593 PDIIHC+DW TA + L +Y + + + F+ HN QG P K Q PD + + D +N L I ++TT SP YA+ +R T E G + L L H G++NG+D WNPA D +K +Y+ ++ GK EN++ + + + L D PLVG I +G L+ ++ + + Sbjct: 142 PDIIHCNDWHTALIPLLLKTMYASHEFFRNVKTLFSIHNAYRQGNFPLKHF--------QRLLPDEVCAGLHCVKDEVNLLFTGIDHVELLTTTSPRYAECLRGDTPEAFGVGKRLLERELPLH-----GMVNGLDARQWNPAIDKMIKKRYSTENMNGKVENRKMLLEEMKLPWRDG-MPLVGFIATFDDYQGAKLLADSLEKLI 333
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16 Identity = 63/200 (31.50%), Postives = 99/200 (49.50%), Query Frame = 3 Query: 18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 C+DW T + + Y P G+ +A+V F HN YQG + D +LN +R + + +D +IN +K I+ S+ V TVSP YA+E+ S +G GI+NG+D W+P+ D ++ +Y+A ++ KA NKE+++ GL D + PL+ I RL QKG ++ AI Sbjct: 229 CNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILESDRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITTKYDATTAIEAKALNKEALQAEAGL-PVDRKVPLIAFIGRLEEQKGPDVMAAAI 419
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16 Identity = 63/197 (31.98%), Postives = 94/197 (47.72%), Query Frame = 3 Query: 21 HDWQTAFVAPLYWDLYVPKGLN-SARVCFTCHNFEYQGTAPAKELASCGLDVQ---QLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLG 596 +DW TA + +Y KG+ A+V F HN YQG + + L Q + D + +IN +K I+ S+ V TVSP YA E+ S +G+ GI+NG+DT WNPATD + Y+ + K KE+++ +GL D P++G I RL QKG ++ AI + +G Sbjct: 232 NDWHTALLPCYLKSMYQSKGMYLHAKVAFCIHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRKINWMKAGILESDRVVTVSPYYAMEL-VSGAEKGVELDNVIAKTSITGIVNGMDTQEWNPATDKHIDTNYDITTVMDAKPLLKEALQAAVGL-PVDKNIPVIGFIGRLEEQKGSDILVAAISKFVG 426
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BORPD (Glycogen synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=glgA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16 Identity = 66/188 (35.11%), Postives = 92/188 (48.94%), Query Frame = 3 Query: 3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM-QDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL-KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQK 554 PDI+H DW V PL L GL + T HN +QG+ EL G Q+ P D+ A H RIN +K + +++ +TTVS +YA+E+ T E G GL L + I NGID WNPA+D L + Y+A + K+ K +++K GL D L+ +RL QK Sbjct: 135 PDILHAQDWHAGLV-PL---LVRAAGLRYVKTVLTVHNLAFQGSF---ELECAG----QIGVPGAYCTDDGARLHGRINFMKAGLRYADRITTVSRNYAREIMTPEFGCGLDPLLRARAADLAPIPNGIDDALWNPASDPHLGHLCYSARNPARKSRAKAALQKAFGL-HPDQGAALLAMGSRLTSQK 310
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PELLD (Glycogen synthase OS=Pelodictyon luteolum (strain DSM 273) GN=glgA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 3 Query: 3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD--NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 PDIIHCHDW + + L +Y + + T HN QG P K V + P+ + + + + +N L + ++++TT S +A E+ E G GL L + GI+NGIDT WNP+TD +K ++ + + GK +N+ ++ + + + D R P+VG I +G LI ++ Sbjct: 142 PDIIHCHDWYASLIPLLLKTVYRDHEFFKGIKTVLTIHNAYRQGVLPFK--------VFEKLLPEEVSGALHRSAENVNMLYTGVENADMLTTTSKLHADEILHDEIPGCGLQQILAGQNGILHGIVNGIDTRQWNPSTDKLIKKRFATDRMDGKLDNRAALSEEVHMPFEDGR-PVVGVIMHFDDFQGAVLIEKSL 329
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15 Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 3 Query: 18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD------------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 C+DW T ++ Y G+ A+ F HN YQG D +LN P+R + S+ D +IN +K I+ ++ V TVSP YA+E+ S +G GI+NG+D W+P+ D ++ V+Y+ + ++ KA NKE+++ +GL D + PLV I RL QKG ++ AI Sbjct: 231 CNDWHTGPLSCYLKSNYQSNGIYKDAKTAFCIHNISYQGRFAFS-------DFPELNLPERFK--SSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIAVKYDVSTAVEAKALNKEALQAEVGL-PVDRKIPLVAFIGRLEEQKGPDVMAAAI 421
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PROA2 (Glycogen synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glgA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15 Identity = 59/197 (29.95%), Postives = 83/197 (42.13%), Query Frame = 3 Query: 3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNS--AHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ-GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 PDIIHC DW V L +Y + R T HN QG P K P + D D +N L A+ + VTT S +YA + GL + + VGI NG+D WNPA D +K +++ L K ENK+ + + G+ +A PLVG + +G L+ +I Sbjct: 142 PDIIHCQDWYAGLVPLLLKTMYADCEFFKDIRTVLTVHNAYRQGIYPLKGFKKM--------LPSEVIDKMHVEDDTVNMLFTAVEHFDAVTTTSDAYAGMLADGRSEAFGLDRVIEKRASGLVGIANGLDAKQWNPAADKMIKKKFDIERLSEKTENKKYLLEEFGMELEEA-TPLVGSVINAERFQGSELLMESI 329
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15 Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 3 Query: 18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD------------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581 C+DW T ++ Y G+ A+ F HN YQG D +LN P+R + S+ D +IN +K I+ ++ V TVSP YA+E+ S +G GI+NG+D W+P+ D ++ V+Y+ + ++ KA NKE+++ +GL D PLV I RL QKG ++ AI Sbjct: 226 CNDWHTGPLSCYLKSNYQSHGIYRDAKTAFCIHNISYQGRFAFS-------DYPELNLPERFK--SSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSRDKYIAVKYDVSTAVEAKALNKEALQAEVGL-PVDRNIPLVAFIGRLEEQKGPDVMAAAI 416 The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 360
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bpback to top |