CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            C+DW T  +A    + Y P G+  +A+V F  HN  YQG    +       D  +LN  +R + +      +D      +IN +K  I+ ++ V TVSP YA+E+  S   +G             GI+NG+D   W+P+ D ++  +Y+A   ++ KA NKE+++   GL   D + PL+  I RL  QKG  ++  AI
Sbjct:  232 CNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVMAAAI 422          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            C+DW T  +A    + Y P G+  +A+V F  HN  YQG    +       D  +LN  +R + +      +D      +IN +K  I+ ++ V TVSP YA+E+  S   +G             GI+NG+D   W+P+ D ++  +Y+A   ++ KA NKE+++   GL   D + PL+  I RL  QKG  ++  AI
Sbjct:  232 CNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVMAAAI 422          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CHLCH (Glycogen synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 63/206 (30.58%), Postives = 97/206 (47.09%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD--NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR--TSE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PDIIHC+DW TA +  L   +Y   +   + +  F+ HN   QG  P K          Q   PD +    +   D +N L   I    ++TT SP YA+ +R  T E    G + L   L  H     G++NG+D   WNPA D  +K +Y+  ++ GK EN++ + + + L   D   PLVG I      +G  L+  ++ + +
Sbjct:  142 PDIIHCNDWHTALIPLLLKTMYASHEFFRNVKTLFSIHNAYRQGNFPLKHF--------QRLLPDEVCAGLHCVKDEVNLLFTGIDHVELLTTTSPRYAECLRGDTPEAFGVGKRLLERELPLH-----GMVNGLDARQWNPAIDKMIKKRYSTENMNGKVENRKMLLEEMKLPWRDG-MPLVGFIATFDDYQGAKLLADSLEKLI 333          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 63/200 (31.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            C+DW T  +     + Y P G+  +A+V F  HN  YQG    +       D  +LN  +R + +      +D      +IN +K  I+ S+ V TVSP YA+E+  S   +G             GI+NG+D   W+P+ D ++  +Y+A   ++ KA NKE+++   GL   D + PL+  I RL  QKG  ++  AI
Sbjct:  229 CNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILESDRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITTKYDATTAIEAKALNKEALQAEAGL-PVDRKVPLIAFIGRLEEQKGPDVMAAAI 419          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 63/197 (31.98%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   21 HDWQTAFVAPLYWDLYVPKGLN-SARVCFTCHNFEYQGTAPAKELASCGLDVQ---QLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLG 596
            +DW TA +      +Y  KG+   A+V F  HN  YQG   + +     L  Q     +  D  +      +IN +K  I+ S+ V TVSP YA E+  S   +G+            GI+NG+DT  WNPATD  +   Y+    +  K   KE+++  +GL   D   P++G I RL  QKG  ++  AI + +G
Sbjct:  232 NDWHTALLPCYLKSMYQSKGMYLHAKVAFCIHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRKINWMKAGILESDRVVTVSPYYAMEL-VSGAEKGVELDNVIAKTSITGIVNGMDTQEWNPATDKHIDTNYDITTVMDAKPLLKEALQAAVGL-PVDKNIPVIGFIGRLEEQKGSDILVAAISKFVG 426          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BORPD (Glycogen synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=glgA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 66/188 (35.11%), Postives = 92/188 (48.94%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM-QDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL-KVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQK 554
            PDI+H  DW    V PL   L    GL   +   T HN  +QG+    EL   G    Q+  P     D+ A  H RIN +K  + +++ +TTVS +YA+E+ T E G GL   L   +     I NGID   WNPA+D  L  + Y+A +   K+  K +++K  GL   D    L+   +RL  QK
Sbjct:  135 PDILHAQDWHAGLV-PL---LVRAAGLRYVKTVLTVHNLAFQGSF---ELECAG----QIGVPGAYCTDDGARLHGRINFMKAGLRYADRITTVSRNYAREIMTPEFGCGLDPLLRARAADLAPIPNGIDDALWNPASDPHLGHLCYSARNPARKSRAKAALQKAFGL-HPDQGAALLAMGSRLTSQK 310          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PELLD (Glycogen synthase OS=Pelodictyon luteolum (strain DSM 273) GN=glgA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD--NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE-GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PDIIHCHDW  + +  L   +Y   +     +   T HN   QG  P K        V +   P+ +    + + + +N L   +  ++++TT S  +A E+   E  G GL   L   +    GI+NGIDT  WNP+TD  +K ++  + + GK +N+ ++ + + +   D R P+VG I      +G  LI  ++
Sbjct:  142 PDIIHCHDWYASLIPLLLKTVYRDHEFFKGIKTVLTIHNAYRQGVLPFK--------VFEKLLPEEVSGALHRSAENVNMLYTGVENADMLTTTSKLHADEILHDEIPGCGLQQILAGQNGILHGIVNGIDTRQWNPSTDKLIKKRFATDRMDGKLDNRAALSEEVHMPFEDGR-PVVGVIMHFDDFQGAVLIEKSL 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 3
Query:   18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD------------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            C+DW T  ++      Y   G+   A+  F  HN  YQG            D  +LN P+R +  S+ D            +IN +K  I+ ++ V TVSP YA+E+  S   +G             GI+NG+D   W+P+ D ++ V+Y+ +  ++ KA NKE+++  +GL   D + PLV  I RL  QKG  ++  AI
Sbjct:  231 CNDWHTGPLSCYLKSNYQSNGIYKDAKTAFCIHNISYQGRFAFS-------DFPELNLPERFK--SSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIAVKYDVSTAVEAKALNKEALQAEVGL-PVDRKIPLVAFIGRLEEQKGPDVMAAAI 421          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PROA2 (Glycogen synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 59/197 (29.95%), Postives = 83/197 (42.13%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNS--AHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ-GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PDIIHC DW    V  L   +Y   +     R   T HN   QG  P K              P  + D      D +N L  A+   + VTT S +YA  +        GL   +   +   VGI NG+D   WNPA D  +K +++   L  K ENK+ + +  G+   +A  PLVG +      +G  L+  +I
Sbjct:  142 PDIIHCQDWYAGLVPLLLKTMYADCEFFKDIRTVLTVHNAYRQGIYPLKGFKKM--------LPSEVIDKMHVEDDTVNMLFTAVEHFDAVTTTSDAYAGMLADGRSEAFGLDRVIEKRASGLVGIANGLDAKQWNPAADKMIKKKFDIERLSEKTENKKYLLEEFGMELEEA-TPLVGSVINAERFQGSELLMESI 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 3
Query:   18 CHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD------------RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            C+DW T  ++      Y   G+   A+  F  HN  YQG            D  +LN P+R +  S+ D            +IN +K  I+ ++ V TVSP YA+E+  S   +G             GI+NG+D   W+P+ D ++ V+Y+ +  ++ KA NKE+++  +GL   D   PLV  I RL  QKG  ++  AI
Sbjct:  226 CNDWHTGPLSCYLKSNYQSHGIYRDAKTAFCIHNISYQGRFAFS-------DYPELNLPERFK--SSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSRDKYIAVKYDVSTAVEAKALNKEALQAEVGL-PVDRNIPLVAFIGRLEEQKGPDVMAAAI 416          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SSG1_ORYSI9.614e-1731.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL9.614e-1731.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
GLGA_CHLCH9.614e-1730.58Glycogen synthase OS=Chlorobium chlorochromatii (s... [more]
SSG1_ORYSA1.256e-1631.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA2.797e-1631.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
GLGA_BORPD8.139e-1635.11Glycogen synthase OS=Bordetella petrii (strain ATC... [more]
GLGA_PELLD1.063e-1528.93Glycogen synthase OS=Pelodictyon luteolum (strain ... [more]
SSG1_SORBI2.368e-1531.19Granule-bound starch synthase 1, chloroplastic/amy... [more]
GLGA_PROA24.039e-1529.95Glycogen synthase OS=Prosthecochloris aestuarii (s... [more]
SSG1_MAIZE5.276e-1531.19Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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