CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_TREDE (Glycogen synthase OS=Treponema denticola GN=glgA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.095e-28
Identity = 70/186 (37.63%), Postives = 98/186 (52.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 560
            PD++H HDW    V  L           +    FT HN  YQG          GLD          +D    DRIN LK A+V S+++TTVSPSYA+E++  E G  +   L +  K+  GILNG+DT  WNP+ D ++  +YN+  L+ K +NK  +++  GL   D   P+ G I+RLV QKG+
Sbjct:  132 PDVVHAHDWAAGLVPVLLRFTEKNTEFKNTASVFTIHNMGYQGVYSKHTFPDTGLDWNDFYTTG-FED---WDRINFLKAALVSSDMLTTVSPSYAEEIKRPEFGFRMDGILRYREKELTGILNGVDTSIWNPSKDEYIPYRYNSKTLEEKEKNKSVLQERFGL-EIDISVPVFGMISRLVDQKGI 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 73/193 (37.82%), Postives = 105/193 (54.40%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            D++H +DWQT  V      LY      S  V   T HN  YQG   +  +   GL     N    +     + +IN LKG I+FS+++ TVSP+YAQE++T E G+ L   L   S    GILNGID D +NP TD  + V Y+  +++ K ENK+ ++K L L   +   P++G ITRLV QKG+ ++   +
Sbjct:  133 DVLHINDWQTGLVPVYLKTLYKDDEFFSKTVVLLTIHNLGYQGIFDSSYMNFSGLPDYLYN----IDGIEFYGKINFLKGGILFSDVINTVSPTYAQEIQTKEYGEKLDGVLRLRSSDLYGILNGIDYDEYNPETDKRIYVNYSLQEIEKKYENKKMLQKELNLPQTN-DVPVIGMITRLVDQKGLDILSEVL 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRSV (Glycogen synthase OS=Streptococcus sanguinis (strain SK36) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 77/203 (37.93%), Postives = 111/203 (54.68%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAK---ELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H HD+ TA +  L  + Y   +   +     T HN E+QG  P     EL   G +        R  D +   +D +N +K  I++++ VTTVSPSYA E+RT E G  L   L   S K VGI+NGIDTD +NP TD  L   ++ +DL GK ENK ++++ +GL   D   P+VG ++RL  QKG  L+   ++  L
Sbjct:  126 PDVLHVHDYHTAMIPFLVKEKYHWIQAYQNITTVLTIHNLEFQGQFPDSMLWELFGVGYE--------RYADGTLRWNDCLNWMKAGILYADRVTTVSPSYASEIRTPEFGCNLDQILRMESGKLVGIVNGIDTDIYNPETDPLLAHHFDKSDLSGKLENKRALQERVGLPVRD-DVPVVGIVSRLTRQKGFDLVVEELHNLL 319          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRGC (Glycogen synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAK---ELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H HD+ TA +  L  + Y   +   + +   T HN E+QG  P     EL   G +        R  D +   +D +N +K  I++++ VTTVSPSYA E+RT E G  L   L   S K VGI+NGIDT+ +NP TD  L   ++ +DL GK ENK ++++ +GL   D   PLVG ++RL  QKG  L+   ++  L
Sbjct:  126 PDVLHVHDYHTAMIPFLVKEKYHWIQAYRNIKTVLTIHNLEFQGQFPDSMLWELFGVGYE--------RYADGTLRWNDCLNWMKAGILYADRVTTVSPSYAGEIRTPEFGCNLDQILRMESGKLVGIVNGIDTEIYNPETDPLLAHHFDKSDLSGKLENKRALQERVGLPVRD-DVPLVGIVSRLTRQKGFDLVVEELHNFL 319          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 71/189 (37.57%), Postives = 104/189 (55.03%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKG-LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            D++H HDWQ A +  L  +    +G + + +  FT HN  +QG  P    A   L   +LN  D ++    +++IN +K  I+F++ VTTVSP YA+E++T E G GL   +       VG+LNG+DT  WNPATD  L  +Y+  DL GK   +  + K  G  + D   P+ G + RL  QKGV L+
Sbjct:  134 DVVHAHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLP-DELNSVDGLE---YYEQINFMKAGILFADRVTTVSPRYAEEIQTPEFGCGLDGVVQTRESDLVGLLNGVDTKVWNPATDPLLPARYSRADLAGKRVCRAELLKRFGF-APDFDGPVFGMVCRLAEQKGVDLV 317          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 72/200 (36.00%), Postives = 103/200 (51.50%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDWQT  + P Y       G    +  FT HN  +QG  P + L   GL      R   +     +  I  LK  +  ++ +TTVSPSYA E++ SE G GL   L   + +  GILNGIDTD WNPA+D  +   Y+   +  +A NK+ ++   GL   +    L G I+RL  QKG+ L+  A+ + +G G
Sbjct:  134 PDVLHAHDWQTGLL-PAYLKY---SGRPGPKTVFTIHNLAFQGRFPYELLGRLGLP----ERAFGLDGIEYYGGIGYLKAGLQLADRITTVSPSYAAEIQGSEAGMGLDGLLQLRADRLSGILNGIDTDVWNPASDALISATYDVESIAARARNKKVLQARFGL-KPEPGALLYGVISRLSWQKGLDLLLQALPQLIGGG 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 74/190 (38.95%), Postives = 104/190 (54.74%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKG--LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            DI+H +DWQTA + P+Y          L+      T HN  YQG    + L   GL     N    +     + +IN LKG I+FS+I+ TVSP+YA+E++  E G+ L   L   S    GILNGID + +NP TD  + V Y+ N ++ K ENK+ ++K LGL   D   P+ G I RLV QKG+ ++
Sbjct:  134 DIVHVNDWQTALI-PVYLKTVFRDDPLLSKIATVLTIHNLGYQGIFEPEYLRFAGLPDYLYN----IDGIEFYGKINFLKGGIIFSDIINTVSPTYAKEIQQKEYGEKLEGVLRARSSDLYGILNGIDYEEFNPLTDNKIYVNYDLNTIEKKKENKKLLQKELGLPERDV--PMFGMINRLVDQKGLDIM 316          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_DECAR (Glycogen synthase OS=Dechloromonas aromatica (strain RCB) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 76/189 (40.21%), Postives = 105/189 (55.56%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDI+H +DWQTA +AP Y  L+   G  S     T HN  +QG    + LA+ GL         R      HD+++ LK  +  ++ ++TVSP+YA+E++    G GL   L   S +  GILNG+DTD WNPATD  L   Y AN L  K  NK +++  +GL    A +PL G I+RL  QKG+ L+
Sbjct:  137 PDIVHANDWQTA-LAPAY--LHYQGGAASV---VTVHNIAFQGCFGREMLAALGLPEHAW----RFDGVEYHDQLSFLKAGLQLASQISTVSPTYAREIQDEHFGYGLAPLLRHRSAELRGILNGVDTDLWNPATDPVLATGYAANRLAAKRTNKAALQTEMGL-EVTADRPLFGVISRLTSQKGLDLL 314          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_MARAV (Glycogen synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDI+HC+DWQ+A +      +++    ++ +  FT HN  YQG    +   + GL       PD   R +    H +++ +KG +VFS+ +TTVSPSYA E++T   G GL   L   S +  GILNGIDT  WNP  D  L+  Y A+    K++ +  +++ LGL    A  PL+G + RLV QKG+  +   I   L  G
Sbjct:  137 PDIVHCNDWQSALIP-----VFLADSQDAPKTVFTIHNLAYQGLFSHETFRALGL-------PDSLWRYEFLEFHGQLSFIKGGLVFSDAITTVSPSYADEIQTPWFGNGLDGLLRHKSSRLHGILNGIDTRQWNPEADPHLEFHYGADYPANKSQCQARLQQELGLEVCGA--PLLGFVGRLVEQKGLDWLLGVIKPLLERG 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 73/191 (38.22%), Postives = 99/191 (51.83%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPL--YWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            P ++H HDWQTA +  L  +W  Y        R   T HN  +QG   ++   +CGL  Q  +    M     +   N LKG I +++ VTTVSPSYA+E+ T E G GL   L   +    GILNG D D W P  D FL   Y+ + L GK   K ++   LGL S+   +P++G I RL  QKG+ L+
Sbjct:  133 PAVVHAHDWQTALLPALLYHWRRY-DSFWEDTRTVMTIHNLAFQGRFSSRLFENCGLPPQAWS----MDGVEFYGDFNLLKGGIAYADKVTTVSPSYAREITTPEFGCGLEGILRRRTHALHGILNGADYDIWKPEDDRFLPCTYSPDRLAGKQRCKRALLDELGLDSSLMERPVLGFIGRLRDQKGIDLL 318          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_TREDE1.095e-2837.63Glycogen synthase OS=Treponema denticola GN=glgA P... [more]
GLGA_THEAB1.430e-2837.82Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_STRSV1.430e-2837.93Glycogen synthase OS=Streptococcus sanguinis (stra... [more]
GLGA_STRGC1.868e-2837.93Glycogen synthase OS=Streptococcus gordonii (strai... [more]
GLGA_OPITP1.868e-2837.57Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]
GLGA_RHOPT2.439e-2836.00Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_FERNB2.439e-2838.95Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_DECAR2.439e-2840.21Glycogen synthase OS=Dechloromonas aromatica (stra... [more]
GLGA_MARAV3.186e-2836.45Glycogen synthase OS=Marinobacter aquaeolei (strai... [more]
GLGA_DESDG3.186e-2838.22Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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