CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS9 (Glycogen synthase OS=Synechococcus sp. (strain CC9902) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 79/199 (39.70%), Postives = 107/199 (53.77%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK--ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++HCHDW T  +    W    P+        FT HN +YQG    K   +  C         P  MQ +      + +  A++ ++ V  VSP+YAQE+RT+E G+ LH  LNF S K  GILNGID +AW+PATD  L   Y+A DL GKA  K+ +++ +GL   D    L+G +TRLV QKGV L+     R L
Sbjct:  122 PQVLHCHDWHTGMIP--VWMHQDPE----ISTVFTIHNLKYQGPWRWKLDRITWC---------PWYMQGD------HTMAAALINADRVNAVSPTYAQEIRTAEYGENLHGLLNFVSGKLRGILNGIDLEAWDPATDKALPANYSAADLTGKAVCKQVLQERMGLEVRDDAF-LLGMVTRLVDQKGVDLLLQVADRLL 298          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_GRABC (Glycogen synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 72/195 (36.92%), Postives = 106/195 (54.36%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PDI+H HDWQ   V P Y  L + +      V FT HN  +QG  P   LA+  L       PD    +    + +I  LK  + +++ +TTVSPSYA+E++T  GG GL   L   +    G+LNGID   WNPA D  +K  ++ + L+ +  N+E++R   GL S+    PL G ++RL  QKG+ L+ +A+
Sbjct:  131 PDIVHAHDWQAGLV-PAY--LALSEASPRPPVLFTIHNLAFQGVVPRDRLAALLLP------PDSFSVDGVEYYGQIGLLKAGLHYADALTTVSPSYAREIQTDTGGMGLGGLLRDRAAVLNGLLNGIDMTEWNPAHDPHVKAHFDRHSLEHRTINREALRTRFGLDSSAG--PLFGIVSRLTGQKGIDLVLNAL 314          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PD++H HDWQT  + P Y       G    +  FT HN  +QG  P + L   GL      R   +     +  I  LK  +  ++ +TTVSP+YA E++ SE G GL   L   + +  GILNGIDTD WNPA+D  +   Y+   +  +A NK+ ++   GL   +    L G I+RL  QKG+ L+  A+ + +G G
Sbjct:  134 PDVLHAHDWQTGLL-PAYLKY---SGRPGPKTVFTIHNLAFQGRFPYELLGRLGLP----ERAFGLDGIEYYGGIGYLKAGLQLADRITTVSPTYAAEIQGSEAGMGLDGLLRLRADRLSGILNGIDTDVWNPASDALISATYDVESIAARARNKKVLQARFGL-KPEPGALLYGVISRLSWQKGLDLLLEALPQLIGGG 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_FINM2 (Glycogen synthase OS=Finegoldia magna (strain ATCC 29328) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 75/193 (38.86%), Postives = 106/193 (54.92%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKG---LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 575
            DIIH +DW TA V     D    KG     S +  FT HN +YQG   +  L    L        D ++    +D IN +KGAIVFS+ VTTVS +YA E++ S  G+GL   +  +  K  GI NGIDT  WNP TD +L   Y+  +++ K ENK+++++  GL   +   P+   +TRLV  KG+ L+R+
Sbjct:  127 DIIHSNDWHTAMVNVYARDF--AKGDPFYESIKTVFTIHNLKYQGVFSSNSLRQTDLSPMYFTE-DALK---FYDAINFMKGAIVFSDRVTTVSKTYADEIKYSFFGEGLDGVIRQYHYKISGITNGIDTTIWNPETDKYLFKNYSLKNIKDKDENKKALQRMYGLEEKNV--PVFAMVTRLVENKGLELVRY 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 77/206 (37.38%), Postives = 105/206 (50.97%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA--IYRTLGAGRTIL 614
            PD++H HDWQ   V P Y      +G  +    FT HN  +QG  PA  L + GL          +        I  LK  + F++ +TTVSP YA E+ T +GG GL   L        GILNG+DT  WNPATD  L  +Y+  +L  +A NK +++  +GL + D R  L G ++RL  QKG+ LI  A  +   LGA   +L
Sbjct:  131 PDLLHAHDWQAGLV-PAYLHY---EGHAAPPCVFTVHNLAFQGWFPAHLLGALGLPASAFV----IDGVEYFGGIGFLKAGLQFADAITTVSPRYATEIATQDGGMGLDGLLRKRGSAVHGILNGLDTATWNPATDEHLAARYDVANLAARAVNKRAVQARMGL-APDPRALLFGVVSRLAGQKGIDLIIEALPVLDALGAQLAVL 327          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ALHEH (Glycogen synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 74/200 (37.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:    9 IIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGL--SSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            ++H HDWQTA    L     VP+        FT HN  Y+G  PA+     GL  +    P+ ++    H R+  +KG + +++ +TTVSP+YA+E++T   G GL   L   S    GI+NGIDT  WNPA D  L   Y   D   +A N+ ++ + +GL   + +   PL+G + RLV QKGV LI  A+ R L  G
Sbjct:  134 VLHAHDWQTALAPFLLQRRPVPR----PATVFTIHNLAYRGLFPAETHTRLGLPPEAWT-PEGLE---FHGRLAFIKGGLAYADAITTVSPTYAREIQTPAFGCGLDGLLRHRSGVLHGIVNGIDTTVWNPAADPHLAACYRKPDPAARAANRAALAQRIGLDGDTGERSGPLLGFVGRLVEQKGVDLILAALPRLLAGG 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_NITEC (Glycogen synthase OS=Nitrosomonas eutropha (strain C91) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG 557
            PDI+HC+DWQ+  + P Y  L+   G  +A +  T HN  +QG  P+ E+A  GL  +  +    M     +  ++ LK  I +S+ ++TVSP YA+E++    G GL   L   S    GI+NGIDT  WNPATD +L  +Y + +L  KA NK ++++ +GL +  A  PL G ++RL  QKG
Sbjct:  147 PDIVHCNDWQSG-LTPAY--LHFHSGKKAASL-ITLHNLAFQGNFPSDEVAKLGLPDESFS----MHGAEFYGNLSFLKAGIYYSDHISTVSPGYAREIQQEPLGFGLQGLLAKRSDDITGIVNGIDTAIWNPATDPYLVKKYTSRNLSAKAANKLALQQTMGLENNQA-IPLFGTVSRLTHQKG 322          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_HELMI (Glycogen synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL---IRHAIYR 587
            PDI+H +DWQ      L  + Y   P     A V  T HN EYQG      L   GL  Q L RPD ++    + ++N +K  +VF++++ TVS +YA+E++TSE G GL   L        GI+NGID + ++PATD  +   Y+A++++GK  NK  +++  GL  ++A  PL+G + RLV QKG+ L   I  A++R
Sbjct:  132 PDILHFNDWQCGPAIALLKEEYRHHPAYRRIASV-LTVHNLEYQGHFGRDILQFIGLR-QDLFRPDALE---FYGQVNFMKAGLVFADLINTVSRTYAEEIQTSEYGWGLDGLLRLRHSDLFGIVNGIDVEVYDPATDPHIPHHYSADNIEGKKRNKAELQRQFGLPVSEA--PLLGLVHRLVDQKGIDLFEGIEEALFR 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 71/194 (36.60%), Postives = 104/194 (53.61%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            P I+H +DWQ      L    +     L  AR  FT HN  YQG  P + L + GL  +      R +     D+++ +K  + F++ +TTVSP+YA+E+ T EGG  L + L   ++   GILNGID  AW+PA D  L   + A DL GKA  K ++++ +GL       P+ G +TRL  QKG+ L+  A+
Sbjct:  127 PRILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVF----RWEAMEFFDQLSFMKAGLAFADALTTVSPTYAREILTPEGGASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFTAGDLAGKAACKAALQREVGL-PVRPEVPVAGLVTRLAEQKGIDLVAAAL 315          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 71/194 (36.60%), Postives = 104/194 (53.61%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            P I+H +DWQ      L    +     L  AR  FT HN  YQG  P + L + GL  +      R +     D+++ +K  + F++ +TTVSP+YA+E+ T EGG  L + L   ++   GILNGID  AW+PA D  L   + A DL GKA  K ++++ +GL       P+ G +TRL  QKG+ L+  A+
Sbjct:  127 PRILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVF----RWEAMEFFDQLSFMKAGLAFADALTTVSPTYAREILTPEGGASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFGAGDLTGKAACKAALQREVGL-PVRPEVPVAGLVTRLAEQKGIDLVAAAL 315          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_SYNS94.161e-2839.70Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_GRABC4.161e-2836.92Glycogen synthase OS=Granulibacter bethesdensis (s... [more]
GLGA_RHOPA5.434e-2835.50Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_FINM25.434e-2838.86Glycogen synthase OS=Finegoldia magna (strain ATCC... [more]
GLGA_ACICJ5.434e-2837.38Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_ALHEH7.097e-2837.00Glycogen synthase OS=Alkalilimnicola ehrlichei (st... [more]
GLGA_NITEC9.269e-2838.38Glycogen synthase OS=Nitrosomonas eutropha (strain... [more]
GLGA_HELMI9.269e-2838.00Glycogen synthase OS=Heliobacterium modesticaldum ... [more]
GLGA_ANASK9.269e-2836.60Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_ANAD29.269e-2836.60Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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