CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 67/193 (34.72%), Postives = 100/193 (51.81%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            P ++H HDW  A        L   +G   A   +T HN  YQG  PA      GL        +++     + +I+ +KG + F++ +TTVSP+YA+E++ +E G GL   L        GILNG+D   WNPA D  +   Y    L GKA+ K +++  LGL+  D   PL+  ++RL  QKG+HL+  A+
Sbjct:  137 PRVVHAHDWHAALAPAYLRALEWARGRRLAGSVYTVHNLAYQGFFPAHHFGDLGLPAAY----NQVHGLEFYGQISFMKGGLYFADRITTVSPTYAREIQGAEQGCGLDGLLRDRDADLSGILNGVDDAVWNPAGDALIPATYTRRKLTGKAQCKATLQAELGLAE-DPAVPLLCVVSRLTEQKGLHLVLQAL 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ACIAC (Glycogen synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 73/203 (35.96%), Postives = 112/203 (55.17%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYW----DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            DI+H +DW TA +APLY     D   P+G   AR   T HN  +QG  P       G++ + L     ++      +++ LK  + +++ +TTVSP+YA+E++T E G GL   L   + +  GILNGIDT  WNP+ DT +   ++A+ L+GKA  K ++R+ LGL+  D  + L G + R+  QKG+  +     R L  G
Sbjct:  134 DIVHANDWPTA-LAPLYLRQFRDAAGPRGDAVARSMVTVHNLAFQGVFPMDWAQRLGIEDRHLG----IEGAEFWGQLSMLKAGLQYADAITTVSPTYAREIQTPELGFGLDGVLRARAGRLQGILNGIDTALWNPSQDTLIPAPFSADRLEGKAACKAALRRTLGLAQ-DGDRMLFGLVGRMTEQKGIDWVIGGAERLLRQG 330          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 76/200 (38.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA-PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            D++H HDW  A +A     LY P         +T HN  +QG   P    +  GL     +    M+    + R+N +KG IVF+  VTTVSPSYA+E++T E G GL   L  H+ K  GILNG+DT+ ++P  D +L   Y   D  GKA  KE+ R+  GL     R P++  + RL  QKG+ L+  A+ R L  G
Sbjct:  116 DLVHAHDWTAALLA-----LYAP-------TVYTIHNLAHQGLVDPGLFFSWTGLPWSLFH----MEALEFYGRVNLMKGGIVFARRVTTVSPSYAEEIQTPEFGMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDPSGKARAKEAFRERTGL-----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMG 294          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THET2 (Glycogen synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 76/200 (38.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA-PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            D++H HDW  A +A     LY P         +T HN  +QG   P    +  GL     +    M+    + R+N +KG IVF+  VTTVSPSYA+E++T E G GL   L  H+ K  GILNG+DT+ ++P  D +L   Y   D  GKA  KE+ R+  GL     R P++  + RL  QKG+ L+  A+ R L  G
Sbjct:  116 DLVHAHDWTAALLA-----LYAP-------TVYTIHNLAHQGLVDPGLFFSWTGLPWSLFH----MEALEFYGRVNLMKGGIVFARRVTTVSPSYAEEIQTPEFGMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDPSGKARAKEAFRERTGL-----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMG 294          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 77/197 (39.09%), Postives = 106/197 (53.81%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H +DWQ A +       Y  K     +   T HN  YQG          GL  ++L +  +   N A    N LK  IV +  ++TVSP+YA+E++T E G GL  TL   S +  GILNGID   +NPATD  + V ++ N L+ K ENK +++K LGL   D   P++G I+RLV QKG  LI  A  + L
Sbjct:  124 PDLLHVNDWQPALIPAYISAFYNGK----PKTLLTIHNLGYQGEFDKSYFYKTGLP-EKLWQEGKAVKNGA---FNFLKTGIVTATAISTVSPTYAKEIQTPEYGAGLDETLRALSDRLFGILNGIDYSEYNPATDKRIPVNFDINSLEKKKENKIALQKELGLPVIDV--PVIGLISRLVEQKGFDLIEAAAEKIL 310          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.065e-27
Identity = 69/206 (33.50%), Postives = 112/206 (54.37%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKG--LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTILY 617
            D+IHCHDW TA + PLY      +       +   T HN  YQG  P ++L   G   Q++   D ++    +  +N LKG +  ++I+TTVSP+YA+E+ T + G GL   L    +  VGI+NGID   WNP  D F+  +Y   ++  K +NKE +    G++S+  + P++  I R+V QKG+ ++  A+   +  G + ++
Sbjct:  146 DVIHCHDWHTALI-PLYLKTLYRECSCFEKTKTVLTVHNLGYQGIFPREKLELTGFG-QEMFHIDGLE---FYGMVNFLKGGLFNADIITTVSPTYAKEILTPDYGAGLDGVLRKRKENLVGIINGIDYKIWNPEEDPFIAKKYGLQNINDKQKNKEDLIALAGINSS-LQDPIIAFIGRMVYQKGIDIVVDAMPNLIKNGISFIF 345          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDI+H HDWQ A +AP Y  L+         V  T HN  YQG    + + + GL     +    +        I+ LK  + F++ +TTVSP+YA+E+++ EGG GL   L   +    GILNGID   WNP TD+ +  ++ A DL  +A NK  +++   L S+D   PL+G I+RL  QKG+ L+  AI   LG G
Sbjct:  134 PDIVHAHDWQ-AGLAPAY--LHYDNRPRPGTV-MTIHNMAYQGKFAPELIGAIGLPWSSFD----VNGLEYFGGISFLKAGLQFADRITTVSPTYAREIQSDEGGMGLGGLLRARAGALSGILNGIDIAVWNPQTDSHIAYRFGAEDLTFRAANKAVLQQQFNLDSSD-EAPLLGVISRLSWQKGLDLLLEAIPTILGEG 324          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_VARPS (Glycogen synthase OS=Variovorax paradoxus (strain S110) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 74/204 (36.27%), Postives = 105/204 (51.47%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND---LQGKAENKESIRKHLGLSS-ADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW  A +AP Y       GL      FT HN  YQG +     A  GL     +    M     H +++ +KG + F++ +TTVSP+YA+E++T E G GL   L        GILN +D + WNPATD+ L   Y+  D   + GKA  K  ++  LGL+   DA  PL   ++RL  QKG+HL+   +   L  G
Sbjct:  138 PEVVHAHDWH-AGLAPAYLHFAREAGLTRTGSVFTVHNLAYQGISAPWNFADLGLPAPAFH----MNGLEYHGQVSFMKGGLYFADRLTTVSPTYAREIQTPEQGFGLDGLLRLRGGVLTGILNAVDDEVWNPATDSALVQGYHTPDGRHMAGKARCKAVLQHQLGLAERPDA--PLFILVSRLTEQKGLHLVLGGLDTLLAEG 334          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CLOBB (Glycogen synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLN--SARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P++IHC+DWQT  +  L    Y+ K +     +  F+ HN  +QG      L    G D +Q    +   D    D +  +KGAI +S+++TTVS SYA+E++T E G+ L   L   S    GILNGID D +NP  D+ +   Y+ N++  K ENK +++  LGL S +   P++  +TRL  QKG+ L+ H   R L
Sbjct:  126 PNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSVFSIHNIAFQGVFDPVILPELFGYDYEQYTNTNLKFD----DGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKSYMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGL-SVNENIPMIAMVTRLTSQKGLDLLVHISERLL 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BACCR (Glycogen synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 65/191 (34.03%), Postives = 109/191 (57.07%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQL-NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            D++H HDW TA V  L  + Y    L    +  +T HN ++QG  P + +     D+ +L +     +    +  +N +KG I+ S+ +T VSP+Y +E++    G+ L   L  ++ K  GI+NGIDT  +NP TD+++K QY+A  L  K+ENK +++++ GL   +   P++  +TRL  QKG+ L+R
Sbjct:  127 DVLHSHDWHTAMVNFLLREKYQDNPLYERIKTVYTIHNLQFQGVFPPEVI----YDLLELGDEYFHSEQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYIKAQYDAESLYEKSENKRALQRYFGLPEKE-DTPIISMVTRLTKQKGLDLVR 312          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_LEPCP1.211e-2734.72Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_ACIAC1.211e-2735.96Glycogen synthase OS=Acidovorax avenae subsp. citr... [more]
GLGA_THET81.581e-2738.00Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_THET21.581e-2738.00Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_KOSOT1.581e-2739.09Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
GLGA_THEYD2.065e-2733.50Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA2_BRAJA2.697e-2738.00Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_VARPS3.522e-2736.27Glycogen synthase OS=Variovorax paradoxus (strain ... [more]
GLGA_CLOBB3.522e-2736.50Glycogen synthase OS=Clostridium botulinum (strain... [more]
GLGA_BACCR3.522e-2734.03Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
back to top