CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 72/200 (36.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD+IHC+DWQT  + P    L      +     FT HN  YQG    ++  +       L  P      +A   +++I+ +KG +VF++ +TTVSP+YA+E+ T E G GL   L   SK+  GILNG D   W+P  D F++ +Y+      KA NK ++++  GL   D   P++G + RLV QKG+ LI  A+ + L
Sbjct:  135 PDLIHCNDWQTGLIPPFLAPLR-----SRPATLFTIHNLAYQGVFSRQQFDA-------LELPSAWWSPAALEFYNQISFIKGGLVFADWLTTVSPTYAKEILTPEFGCGLDGVLRGRSKRLTGILNGADYQRWDPRHDPFIEKRYDQTCWSHKASNKLALQRRYGLPEDDT-LPVLGFVGRLVEQKGIDLILGALPKLL 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BACC4 (Glycogen synthase OS=Bacillus cereus (strain B4264) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 65/191 (34.03%), Postives = 109/191 (57.07%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQL-NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            D++H HDW TA V  L  + Y    L    +  +T HN ++QG  P + +     D+ +L +     +    +  +N +KG I+ S+ +T VSP+Y +E++    G+ L   L  ++ K  GI+NGIDT  +NP TD+++K QY+A  L  K+ENK +++++ GL   +   P++  +TRL  QKG+ L+R
Sbjct:  127 DVLHSHDWHTAMVNFLLREKYQDNPLYERIKTVYTIHNLQFQGVFPPEVM----YDLLELGDEYFHSKQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYIKAQYDAESLYEKSENKRALQRYFGLPEKE-DTPIISMVTRLTKQKGLDLVR 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 72/195 (36.92%), Postives = 105/195 (53.85%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLS-SADARKPLVGCITRLVPQKGVHLIRHAI 581
            P I+H +DWQ      L    +     L  AR  FT HN  YQG  P + L + GL  +      R +     D+++ +K  + F++ +TTVSP+YA+E+ T EGG  L + L   ++   GILNGID  AW+PA D  L   +   +L GKA  K ++++ +GL    DA  PL G +TRL  QKG+ L+  A+
Sbjct:  127 PRILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVF----RWEAMEFFDQLSFMKAGLAFADALTTVSPTYAREILTPEGGASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFTPGELAGKAACKAALQREVGLPVRRDA--PLAGLVTRLAEQKGIDLVAAAL 315          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 71/198 (35.86%), Postives = 99/198 (50.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD+ H HDW TA V      LY    L   A    T HN ++QG      +   G+  +        +DN      N LKG +  + ++ TVS  YA+E++T E G GL   +   S   VGILNG+D + WNP TD  +   Y+ +DL GK   K  +++  GL   D   PL G + RLV QKG+ ++  AI+R L
Sbjct:  137 PDVFHAHDWHTAAVPVFLNTLYRDDPLVGGAASVLTVHNMQHQGNFYPGAMEVLGIGWEHFTFLGLEKDNQT----NLLKGGLYHATVLNTVSEGYAREMQTPEYGWGLDGVVRARSADLVGILNGVDYEEWNPETDPHIVANYSRSDLSGKKLCKRDVQRFFGLPERD-DVPLFGLVGRLVKQKGIDILAEAIHRIL 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERE8 (Glycogen synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 74/215 (34.42%), Postives = 107/215 (49.77%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI---------YRTLGAGRTIL 614
            P+++H HDW            Y+      AR  FT HN  YQG      LA   L         +M     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   +   +  GILNG+D+D W+P TDT L  +Y+A DLQ KA NK  ++  +GL   + +KP+   ++RL  QKG+ L+  A+            LGAG  IL
Sbjct:  130 PEVVHAHDWHAGLACA-----YLAARGRPARSVFTVHNLAYQGLFSGHHLAEIQLPAAFF----QMYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQERASQGRLTGILNGVDSDIWDPQTDTLLHARYDAEDLQKKAVNKTHLQTTMGLEVTE-KKPIFAVVSRLTEQKGLDLVLEALPDLLQLGGQLAVLGAGDAIL 334          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRU0 (Glycogen synthase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGT---APAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++H HD+ TA +  L  + Y   +     R  FT HN E+QG        +L   GL+        R +D +   ++ +N +K  +++++ VTTVSPSYA E++T   G+GL   +   S K  GI+NGIDT+ +NP  D  +   ++ NDL GKA+NK+ +++ LGL   +   PL+G ++RL  QKG  ++
Sbjct:  126 PDVLHVHDYHTAMIPFLLKEKYHWIQAYQKIRTVFTIHNIEFQGQFGPGMLGDLFGVGLE--------RYEDGTLRWNNCLNWMKAGVLYADRVTTVSPSYANEIQTVAFGKGLDQVMRMESGKLSGIVNGIDTELYNPENDPHVTFPFSINDLSGKAKNKKELQEQLGL-PVNENIPLIGIVSRLTDQKGFDIL 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CLOB8 (Glycogen synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLN--SARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD+IHC+DWQT  +  L    Y    +     +  ++ HN  +QG    + L    G D++  N      D    D ++ +KG + +S+++TTVS +YA E++T E GQ L   L   S    GI NGID D +NP TD F+K  Y+ N ++ KA NK  ++K LGL + D   P++  +TRL  QKG+ L+
Sbjct:  126 PDLIHCNDWQTGMLPVLLKFEYKRNDMFYWKMKCVYSIHNIAFQGVFDPQILPELFGFDMELYNNTCLKFD----DGVSYMKGGLCYSDVITTVSNTYAYEIQTPEYGQRLDGVLRERSYALRGITNGIDYDEFNPKTDKFIKKNYSINSIEDKAINKTELQKELGL-TVDKNIPMLAMVTRLTSQKGMDLL 312          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 70/191 (36.65%), Postives = 112/191 (58.64%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKG--LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PDIIHC+DWQT  + PL+  +              +T HN +YQGT P   L +  L  ++   P+R++    + +++ +K  I+++++V TVS  YA E++T E G+ L   L   +    GILNGID + ++PATD  L V Y+A+ L+ K ENK ++++ + L   D   P++G I+RLV QKG+ L+
Sbjct:  128 PDIIHCNDWQTGPI-PLFLKVKHEDNPFYRETATIYTIHNLQYQGTFPRNILKTMALS-EEFFVPERLE---FYGQVSYMKAGILYADLVNTVSKKYALEIQTPEYGERLDGLLRKRAADLRGILNGIDYEEFDPATDRRLAVNYDADHLEKKGENKAALQREMELPVRDV--PVLGLISRLVSQKGLDLL 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_HALHL (Glycogen synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 70/199 (35.18%), Postives = 116/199 (58.29%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            +++H +DWQTA +AP++    +    +     F  HN  Y+G  PA+     GL  + L +P+ ++    + ++  +KG++VF++ + TVSP+YA+E++T   G GL   L+    +  GI+NGIDT  W+P +D  L  QY   D + +A N+ ++ + +GLS  +   P++G + RLV QKGV LI  A+ R L AG
Sbjct:  133 EVLHGNDWQTA-LAPVF----LRDRADRPATVFGIHNLAYRGLFPAELYPRLGLPAE-LWQPEGLE---FYGQLAFIKGSLVFADTLVTVSPTYAREIQTPAFGWGLDGLLHHRRDRLFGIVNGIDTATWDPGSDRHLVAQYTGPDDRARAANRRAVARAVGLSEGEG--PILGFVGRLVEQKGVDLILAALPRLLAAG 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 64/194 (32.99%), Postives = 109/194 (56.19%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSA-RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR---MQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 572
            P++IHCHDW T  +  L  + Y+     +  +  FT HN ++QG  P + L         LN  DR   ++    +  ++ +KGA+V ++++TTVSP+Y +E++T   G+ L   L   S   VGILNGID + +NP  D ++ V Y+   +  K+ NK ++++H  L S +   P++  ++RL  QKG+ L++
Sbjct:  126 PNVIHCHDWHTGMIPFLLREEYMRNSFYAQMKTVFTIHNLQFQGIFPREILGDL------LNLSDRYFSIEHLEFYGHVSFMKGALVSAHLITTVSPTYKEEIQTPYYGERLDGLLRARSSHLVGILNGIDDEIYNPKKDPYIAVPYDVTTIARKSINKRALQQHFSLPS-EEDVPVIAIVSRLTKQKGLDLVK 312          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA2_NITOC3.522e-2736.00Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_BACC44.600e-2734.03Glycogen synthase OS=Bacillus cereus (strain B4264... [more]
GLGA_ANADE4.600e-2736.92Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA1_GEOSL4.600e-2735.86Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA_YERE86.008e-2734.42Glycogen synthase OS=Yersinia enterocolitica serot... [more]
GLGA_STRU06.008e-2735.38Glycogen synthase OS=Streptococcus uberis (strain ... [more]
GLGA_CLOB86.008e-2736.46Glycogen synthase OS=Clostridium beijerinckii (str... [more]
GLGA_MOOTA7.847e-2736.65Glycogen synthase OS=Moorella thermoacetica (strai... [more]
GLGA_HALHL7.847e-2735.18Glycogen synthase OS=Halorhodospira halophila (str... [more]
GLGA_ANOFW7.847e-2732.99Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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