CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 3
Query:   21 HDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD-------RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            +DW  + V  L    Y P G+   AR     HN  +QG  PA      GL  +     +       R       + +N LKGA+V ++ + TVS  Y+ EV T+EGGQGL+  L+       GI+NGID + WNP+TD FL   Y+ +DL GKA+ K  ++K LGL       PL+G I RL  QKG+ LI+ AI
Sbjct:  277 NDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGL-PIRPDVPLIGFIGRLDYQKGIDLIKLAI 470          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERP3 (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 68/202 (33.66%), Postives = 105/202 (51.98%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNF--HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L    H  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL   ++ KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSAHHLSELQLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALAHQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLTES-KPIFAVVSRLTAQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_LACAC (Glycogen synthase OS=Lactobacillus acidophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 71/191 (37.17%), Postives = 107/191 (56.02%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELASC-GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 569
            PD++HC+D+ TAF+  L  + +         +   T HN E+QG   AK L    G++    +      DN     +N +K  I++++ VTTVSPSYA+E++T E GQGL + L   S K  GILNGID + +NP TD  +K  Y+   L  K+++K +++K L L       PL+G ++RL  QKG  L+
Sbjct:  126 PDVLHCNDYHTAFIPFLLHEKWGFVDAYKGIKTILTIHNLEFQGKYNAKTLPDFFGMNYDWFDSGIVRMDND----VNWMKTGILYADRVTTVSPSYAREIQTVEFGQGLDAILRMCSHKLTGILNGIDFEKYNPKTDPVIKKNYDVYHLHHKSKDKIALQKELDL-PIKPNIPLIGMVSRLTAQKGCQLL 311          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_THECA (Glycogen synthase OS=Thermus caldophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 75/200 (37.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA-PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            D++H HDW  A +A     LY P         +T HN  +QG   P    +  GL     +    M+    + R+N +KG IVF+  VTTV PSYA+E++T E G GL   L  H+ K  GILNG+DT+ ++P  D +L   Y   D  GKA  KE  R+  GL     R P++  + RL  QKG+ L+  A+ R L  G
Sbjct:  117 DLVHAHDWTAALLA-----LYAP-------TVYTIHNLAHQGLVDPGLFFSWTGLPWSLFH----MEALEFYGRVNLMKGGIVFARRVTTVRPSYAEEIQTPEFGMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDPSGKARAKEVFRERTGL-----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMG 295          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 71/206 (34.47%), Postives = 108/206 (52.43%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLY--WDL-YVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAGRTIL 614
            DI+H +DWQT F A     W + ++P       V  T HN  Y G+    + ++  L  + LN    M     + R + LK  +V++N VTTVSP+YA+E+ T E G GL   L     + VGILNG+D + W+P  DT +   Y+ + L  K  NK ++ +  GLS  D  +P+ G ++RL  QKG+ L+   +   L  G  ++
Sbjct:  136 DILHLNDWQTGFAAAYLESWKVEHIP-------VVTTVHNLRYNGSFDMNQFSAMHLSPELLN----MHGMEFYGRFSGLKAGLVYANAVTTVSPTYAKEILTPEYGDGLDGALRAMQDRLVGILNGVDYNQWSPEKDTLIPHNYDIDTLSQKQANKLALLQENGLSE-DLNQPVFGVVSRLTEQKGLDLVLQVMPALLEKGARLV 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 73/198 (36.87%), Postives = 101/198 (51.01%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFV-APLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            P ++H HDWQTA V A LY+           R   T HN  +QG   ++   + GL  Q  +    +         N LK  I +++ VTTVSPSYA+E+     G GL   L   +    GILNG D D W+P  D FL  +Y   DL GKA+ K ++ + LGL    AR+P++G I RL  QKG+ L+   + R +
Sbjct:  133 PAVLHAHDWQTALVPAFLYFLRQTDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAEFWGDFNLLKAGIAYADKVTTVSPSYAREILGPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRYTPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLM 326          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_BURTA (Glycogen synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glgA PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 71/186 (38.17%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR--VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQK 554
            PD++H HDW    VA L       +G   AR    FT HN  +QG     + A  GL    L+    +     + +++ LK    +++ +TTVSP+YA E++T+E G GL         +  GI+NGIDT+ WNPATD +L   Y+ +D+ GKA  K ++++ LGL  ADAR PLV  + RL  QK
Sbjct:  132 PDVVHAHDWHGGLVALL------TRGAGDARPKTVFTIHNAAFQGNFALDDAARIGLPADALS----VDGVEFYGQLSFLKAGARYADRLTTVSPTYAGEIQTAEFGCGLEGLYAARRDQLSGIMNGIDTELWNPATDRWLPQPYSIDDMGGKAGCKAALQQELGL-CADARAPLVASVCRLTSQK 306          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRZJ (Glycogen synthase OS=Streptococcus pneumoniae (strain JJA) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 73/203 (35.96%), Postives = 108/203 (53.20%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGT---APAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H HD+ TA +  L  + Y   +         T HN E+QG        +L   GL+        R  D +   ++ +N +K  I+++N V+TVSPSYA E+ TS+ G  L   L   S K  GI+NGID D +NP TD  L   +N  DL GKA+NK  +++ +GL    A  PLVG ++RL  QKG  ++  +++  L
Sbjct:  126 PDLLHVHDYHTAMIPFLLKEKYCWIQAYEDIETVLTIHNLEFQGQFSEGMLGDLFGVGLE--------RYADGTLRWNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQFGCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQEDLSGKAKNKAKLQERVGL-PVRADVPLVGIVSRLTRQKGFDVVVESLHHIL 319          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_STRPJ (Glycogen synthase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 73/203 (35.96%), Postives = 108/203 (53.20%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV-PKGLNSARVCFTCHNFEYQGT---APAKELASCGLDVQQLNRPDRMQDNSA--HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++H HD+ TA +  L  + Y   +         T HN E+QG        +L   GL+        R  D +   ++ +N +K  I+++N V+TVSPSYA E+ TS+ G  L   L   S K  GI+NGID D +NP TD  L   +N  DL GKA+NK  +++ +GL    A  PLVG ++RL  QKG  ++  +++  L
Sbjct:  126 PDLLHVHDYHTAMIPFLLKEKYCWIQAYEDIETVLTIHNLEFQGQFSEGMLGDLFGVGLE--------RYADGTLRWNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQFGCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQEDLSGKAKNKAKLQERVGL-PVRADVPLVGIVSRLTRQKGFDVVVESLHHIL 319          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 70/200 (35.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDI+H HDWQT  + P Y       G  + +  FT HN  YQG  P++ LA  GL      R   +     +  I  LK  +  ++ +TTVSPSYA E++ SE G GL   L   + +  GILNG+DT  W+P+ D  +   Y+   +  +A NK++++   GL  A++   L G I+RL  QKG+ ++   +   L  G
Sbjct:  134 PDILHAHDWQTGLL-PAYLRY---SGRPAPKCVFTIHNLAYQGQFPSELLARIGLP----ERAFSLDGVEYYGGIGYLKAGLQLADRITTVSPSYALEIQGSEAGMGLEGLLRLRAGQLSGILNGVDTKVWDPSADQLIPATYDVETIGARARNKQALQARFGL-RAESGALLFGVISRLSWQKGLDMLLEVLPGMLADG 324          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SSY1_ORYSJ1.025e-2638.46Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_YERP31.025e-2633.66Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_LACAC1.025e-2637.17Glycogen synthase OS=Lactobacillus acidophilus GN=... [more]
GLGA_THECA1.338e-2637.50Glycogen synthase OS=Thermus caldophilus GN=glgA P... [more]
GLGA_MARMS1.338e-2634.47Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA_DESVH1.338e-2636.87Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_BURTA1.338e-2638.17Glycogen synthase OS=Burkholderia thailandensis (s... [more]
GLGA_STRZJ1.748e-2635.96Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRPJ1.748e-2635.96Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_RHOPS1.748e-2635.00Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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