CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CALS8 (Glycogen synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 77/202 (38.12%), Postives = 110/202 (54.46%), Query Frame = 3
Query:    6 DIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSA---HDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQG-KAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            DIIH +DW T+ +  L    Y   PK     +   T HN  YQG  P + +         L+ PD   D +    +D I+ LKG I+F++ V TVS +YA E+RT   G+GLH  L+   +K VGI+NGID +  NPATD  + V Y+AN  +  K ENK  +++ L L  +D    L+G ++RL  +KG+ LI   + R L
Sbjct:  127 DIIHVNDWHTSVIPVLLKAHYSHSPKH-QKIKTVLTIHNLRYQGVFPKEVMYDL------LSLPDEYFDENKLKFYDAISFLKGGIIFADKVVTVSKTYANEIRTLSHGEGLHGLLSGIGEKLVGIVNGIDYEVCNPATDKLIFVNYDANTFESRKKENKFRLQQMLNLPVSD-DIVLIGMVSRLTKEKGIDLIERILSRLL 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 74/195 (37.95%), Postives = 102/195 (52.31%), Query Frame = 3
Query:   21 HDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD-------RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            +DW  + V  L    Y P G+   AR     HN  +QG  PA      GL  +     +       R       + +N LKGA+V ++ + TVS  Y+ EV T+EGGQGL+  L+       GI+NGID + WNP+TD FL   Y+ +DL GKA+ K  +++ LGL       PL+G I RL  QKG+ LI+ AI
Sbjct:  277 NDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQEELGL-PIRPDVPLIGFIGRLDYQKGIDLIKLAI 470          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPY (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPS (Glycogen synthase OS=Yersinia pseudotuberculosis GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPP (Glycogen synthase OS=Yersinia pestis (strain Pestoides F) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPN (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPG (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPE (Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_YERPA (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK--KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+++H HDW            Y+      AR  FT HN  YQG   A  L+   L  +      ++     + +I+ LK  + F++ VTTVSP+YA+E+     G G+   L   ++  +  GILNG+D+D W+P +DT L  +Y+A +LQ KA NK  ++  +GL  A+  KP+   ++RL  QKG+ L+  A+   L  G
Sbjct:  130 PEVVHAHDWHAGLTCA-----YLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFF----QIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAE-NKPIFAVVSRLTVQKGLDLVLEALPELLALG 321          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ROSDO (Glycogen synthase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 72/206 (34.95%), Postives = 105/206 (50.97%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--GAGRTIL 614
            P+I+H HDWQ   V      +  PK         T HN  +QG      +A  GLD   L   D M+    +  +  LK  + F++ +TTVSP+YA+E+   E G GL   L   ++   GILNGIDTD WNP TD  L   Y+   L+ K ++++++ +  GL+  D   PL   I+RL  QKGV ++   +   +  GAG  +L
Sbjct:  131 PEIVHAHDWQAGLVPAYLHQMDAPK----PPCVLTIHNIAFQGLFSPDLMAPLGLDAA-LYTQDGME---FYGNLGFLKAGLAFADKITTVSPTYAREIMQPEFGMGLEGLLRARARDVSGILNGIDTDVWNPETDPALPKSYSLKGLKAKQQSRQAVLERFGLTPPD-NAPLFCVISRLTTQKGVDVLLDVVPDLVARGAGLAVL 327          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_CALS81.748e-2638.12Glycogen synthase OS=Caldicellulosiruptor saccharo... [more]
SSY1_ORYSI2.982e-2637.95Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_YERPY2.982e-2633.66Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_YERPS2.982e-2633.66Glycogen synthase OS=Yersinia pseudotuberculosis G... [more]
GLGA_YERPP2.982e-2633.66Glycogen synthase OS=Yersinia pestis (strain Pesto... [more]
GLGA_YERPN2.982e-2633.66Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_YERPG2.982e-2633.66Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_YERPE2.982e-2633.66Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 ... [more]
GLGA_YERPA2.982e-2633.66Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_ROSDO2.982e-2634.95Glycogen synthase OS=Roseobacter denitrificans (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
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