CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURPS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia pseudomallei GN=kdsB PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURP6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia pseudomallei (strain 668) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURP1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=kdsB PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURP0 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURMS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia mallei (strain SAVP1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURMA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia mallei GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURM9 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURM7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D HG A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V   +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVRDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDAHGVALYFSRAPIPWSRDAYLPHWPNVAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVRVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=kdsB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 422
            + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  110 LSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLT2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 422
            + P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  110 LSPTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_BURPS9.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURP69.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURP19.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURP09.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURMS9.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURMA9.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURM99.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURM79.374e-2032.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTB1.599e-1939.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLT21.599e-1939.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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