CF417462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURP8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=kdsB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17 Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-------------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESF 419 LI+P ++ GV L A +TA + P D F+PN VK V D G A+YFSR IP+ + P +P + H+G+ +Y + FL+ YP L +P++ E LEQL+ + +G ++ V+ D GVD P+D+ ++++F Sbjct: 110 LIDPALVRGVASHLAATDGCAIATAAHPIHDPADVFNPNVVKVVPDARGVALYFSRAPIPWARDA-YQPHWPNIAQMPAPPAPAAVYRHIGLYAYRAKFLRTYPSLSISPIEQAEALEQLRAMWHGERIAVLVTNDAPLPGVDTPDDLARVQAF 262
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_POLNS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=kdsB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 3 Query: 3 LIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422 LI P++I+ V + L V ST AV + +PN VK V++ G A+YFSR IP+ + + + + +L HLGI +Y ++FL+ Y L P + E LEQL+ L NGY++ V + GVD PED+E++ + Sbjct: 110 LIPPKLINQVARTLAEHEQCVISTVAVPITDAAEINNPNVVKVVLNRSGEALYFSRAPIPFVRDPQSSQKTMHLRHLGIYAYRADFLQAYTRLEPASPEQAEALEQLRALWNGYRIAVHTAPEAPPAGVDTPEDLERVRQLL 251
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLFF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 3 Query: 6 IEPEIIDGVVKALQAAPDA-VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422 ++ ++D +V+ L+ +P+ V + A + + +VKCV D +G A+YFSR IP+ + + P LH+G+ ++ N L Y PT L EDLEQL++LE+G + + V+ ++ VD PED+ K+E ++ Sbjct: 111 LQHTVVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEAKSPSVDYPEDINKVEKYL 246
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ACAM1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=kdsB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 3 Query: 6 IEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 428 + PE ++ +V+ + +T L ED PN VK + D +G+A+YFSR IPY ++ P + HLG+ ++ +FL Y L PTP + E LEQL+VLE GY +KV + A ++ PED+ K + F+++ Sbjct: 103 VTPEALEQLVRPYREGERPEMTTLGCPLDMDEDYASPNAVKVLCDRNGHALYFSRSPIPYFRTQGTVPVYH---HLGLYAFRHDFLMQYSQLEPTPFETCEGLEQLRVLEYGYAIKVCQTQKAAIEINTPEDLVKAQLFIQQ 241
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SYNP6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=kdsB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3 Query: 6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431 + P ++ +V +A +T P +DA DPN VK V D G A+YFSR IPY ++ V P H G+ ++ +FL Y L PTPL+ E LEQL+VLE GY+++V+ + V+ +D+E+ ++ +R Sbjct: 104 VTPGLLQALVSPYRAGELPEMTTVGGPYDPAQDADDPNTVKVVCDQRGNALYFSRSAIPYPRT--VVHDLPVYHHFGLYAFRRDFLAQYRQLPPTPLERCESLEQLRVLEQGYRIRVVPCADKVIEVNTADDLERANAWASQR 244
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SYNE7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=kdsB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3 Query: 6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431 + P ++ +V +A +T P +DA DPN VK V D G A+YFSR IPY ++ V P H G+ ++ +FL Y L PTPL+ E LEQL+VLE GY+++V+ + V+ +D+E+ ++ +R Sbjct: 104 VTPGLLQALVSPYRAGELPEMTTVGGPYDPAQDADDPNTVKVVCDQRGNALYFSRSAIPYPRT--VVHDLPVYHHFGLYAFRRDFLAQYRQLPPTPLERCESLEQLRVLEQGYRIRVVPCADKVIEVNTADDLERANAWASQR 244
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=kdsB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = 3 Query: 6 IEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF------PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 410 I E I V + L A +T AV + E+AF+PN VK V+D GYA+YF+R IPY+++ ++ YL H+GI +Y + F+K Y + P+ L+ E LEQL+VL +G K+ V I G+D PED+++I Sbjct: 104 IPAENIQQVAENLHHHQQAEMATLAVKIVDVEEAFNPNAVKVVLDKQGYAMYFTRATIPYDRARFLDEDIIDEIGDYYLRHVGIYAYRAGFIKQYVNMSPSGLEQIESLEQLRVLWHGEKIHVDIARKTPPAGIDTPEDLKRI 246
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila abortus GN=kdsB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 3 Query: 18 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422 ++D +V+ L+ P+ T V N +VKCV D +G A+YFSR IP+ + + P LH+G+ ++ + L Y P+PL EDLEQL+VLE+G + V V+ ++ VD PED+ K+E ++ Sbjct: 115 VVDALVRKLEEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRSALFSYIASAPSPLSQAEDLEQLRVLEHGGSIHVCVVEAKSPSVDYPEDISKVEEYL 246
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PELPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=kdsB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 48/144 (33.33%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425 LI PE ID ++ + ST V L+P+D DP++VK V+D G+A+YFSR IP+ ++ + P H+G+ ++ ++ L+ + L P+ L+ E LEQL++LENG++++ + + GV+ ED+E++ +R Sbjct: 101 LISPENIDLALEPFFSENPPDCSTLVLPLRPDDHVQIEDPHQVKVVMDAKGFALYFSRSAIPFQRN--MRPTTIVYRHIGLYAFSADVLQKFASLPPSMLEEAESLEQLRLLENGFRIQCVTTLVDNPGVNTVEDLEQVRRIIR 242
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HALHL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=kdsB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKS-------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEKI 410 L+ PE++ V + L PDA +T T + D F+P+ VK V D+ +A+YFSR +P+++ G V +L HLG+ +Y + FL+ +PGL P P + E LEQL+ L +G+ ++V D GVD P D+E + Sbjct: 106 LMPPELVALVAERLDTDPDAAIATLATPVTAADELFEPSVVKVVRDHRDHALYFSRAPVPWDRDRFDGIDDGAVAAG-GWLRHLGLYAYRAAFLRRFPGLEPAPPERLESLEQLRALWHGFAIQVAATDQRPGPGVDTPADLEAV 249 The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 320
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bpback to top |