CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURP8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-------------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESF 419
            LI+P ++ GV   L A      +TA   +  P D F+PN VK V D  G A+YFSR  IP+ +     P +P +              H+G+ +Y + FL+ YP L  +P++  E LEQL+ + +G ++ V+   D    GVD P+D+ ++++F
Sbjct:  110 LIDPALVRGVASHLAATDGCAIATAAHPIHDPADVFNPNVVKVVPDARGVALYFSRAPIPWARDA-YQPHWPNIAQMPAPPAPAAVYRHIGLYAYRAKFLRTYPSLSISPIEQAEALEQLRAMWHGERIAVLVTNDAPLPGVDTPDDLARVQAF 262          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_POLNS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P++I+ V + L      V ST AV      +  +PN VK V++  G A+YFSR  IP+ +  + + +  +L HLGI +Y ++FL+ Y  L P   +  E LEQL+ L NGY++ V    +    GVD PED+E++   +
Sbjct:  110 LIPPKLINQVARTLAEHEQCVISTVAVPITDAAEINNPNVVKVVLNRSGEALYFSRAPIPFVRDPQSSQKTMHLRHLGIYAYRADFLQAYTRLEPASPEQAEALEQLRALWNGYRIAVHTAPEAPPAGVDTPEDLERVRQLL 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLFF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDA-VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422
            ++  ++D +V+ L+ +P+  V + A  +    +     +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  N L  Y    PT L   EDLEQL++LE+G  + +  V+ ++  VD PED+ K+E ++
Sbjct:  111 LQHTVVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEAKSPSVDYPEDINKVEKYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ACAM1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 428
            + PE ++ +V+  +       +T    L   ED   PN VK + D +G+A+YFSR  IPY ++    P +    HLG+ ++  +FL  Y  L PTP +  E LEQL+VLE GY +KV +    A  ++ PED+ K + F+++
Sbjct:  103 VTPEALEQLVRPYREGERPEMTTLGCPLDMDEDYASPNAVKVLCDRNGHALYFSRSPIPYFRTQGTVPVYH---HLGLYAFRHDFLMQYSQLEPTPFETCEGLEQLRVLEYGYAIKVCQTQKAAIEINTPEDLVKAQLFIQQ 241          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SYNP6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            + P ++  +V   +A      +T      P +DA DPN VK V D  G A+YFSR  IPY ++  V    P   H G+ ++  +FL  Y  L PTPL+  E LEQL+VLE GY+++V+    +   V+  +D+E+  ++  +R
Sbjct:  104 VTPGLLQALVSPYRAGELPEMTTVGGPYDPAQDADDPNTVKVVCDQRGNALYFSRSAIPYPRT--VVHDLPVYHHFGLYAFRRDFLAQYRQLPPTPLERCESLEQLRVLEQGYRIRVVPCADKVIEVNTADDLERANAWASQR 244          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SYNE7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            + P ++  +V   +A      +T      P +DA DPN VK V D  G A+YFSR  IPY ++  V    P   H G+ ++  +FL  Y  L PTPL+  E LEQL+VLE GY+++V+    +   V+  +D+E+  ++  +R
Sbjct:  104 VTPGLLQALVSPYRAGELPEMTTVGGPYDPAQDADDPNTVKVVCDQRGNALYFSRSAIPYPRT--VVHDLPVYHHFGLYAFRRDFLAQYRQLPPTPLERCESLEQLRVLEQGYRIRVVPCADKVIEVNTADDLERANAWASQR 244          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF------PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 410
            I  E I  V + L     A  +T AV  +  E+AF+PN VK V+D  GYA+YF+R  IPY+++  ++          YL H+GI +Y + F+K Y  + P+ L+  E LEQL+VL +G K+ V I       G+D PED+++I
Sbjct:  104 IPAENIQQVAENLHHHQQAEMATLAVKIVDVEEAFNPNAVKVVLDKQGYAMYFTRATIPYDRARFLDEDIIDEIGDYYLRHVGIYAYRAGFIKQYVNMSPSGLEQIESLEQLRVLWHGEKIHVDIARKTPPAGIDTPEDLKRI 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila abortus GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   18 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422
            ++D +V+ L+  P+    T V           N +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  + L  Y    P+PL   EDLEQL+VLE+G  + V  V+ ++  VD PED+ K+E ++
Sbjct:  115 VVDALVRKLEEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRSALFSYIASAPSPLSQAEDLEQLRVLEHGGSIHVCVVEAKSPSVDYPEDISKVEEYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PELPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 48/144 (33.33%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425
            LI PE ID  ++   +      ST V  L+P+D     DP++VK V+D  G+A+YFSR  IP+ ++  + P      H+G+ ++ ++ L+ +  L P+ L+  E LEQL++LENG++++ +    +  GV+  ED+E++   +R
Sbjct:  101 LISPENIDLALEPFFSENPPDCSTLVLPLRPDDHVQIEDPHQVKVVMDAKGFALYFSRSAIPFQRN--MRPTTIVYRHIGLYAFSADVLQKFASLPPSMLEEAESLEQLRLLENGFRIQCVTTLVDNPGVNTVEDLEQVRRIIR 242          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HALHL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKS-------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEKI 410
            L+ PE++  V + L   PDA  +T  T +   D  F+P+ VK V D+  +A+YFSR  +P+++        G V     +L HLG+ +Y + FL+ +PGL P P +  E LEQL+ L +G+ ++V   D     GVD P D+E +
Sbjct:  106 LMPPELVALVAERLDTDPDAAIATLATPVTAADELFEPSVVKVVRDHRDHALYFSRAPVPWDRDRFDGIDDGAVAAG-GWLRHLGLYAYRAAFLRRFPGLEPAPPERLESLEQLRALWHGFAIQVAATDQRPGPGVDTPADLEAV 249          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_BURP87.427e-1733.123-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_POLNS9.700e-1736.623-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLFF9.700e-1732.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACAM19.700e-1735.213-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SYNP61.267e-1634.973-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SYNE71.267e-1634.973-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA61.267e-1638.463-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLAB1.267e-1635.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PELPB1.655e-1633.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HALHL1.655e-1635.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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