CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLPD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=kdsB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425
            LI PE ID  ++          ST V  L PED     D N VK V+DN GYA+YFSR  IPY +  +++       H+G+ ++ ++ L  +  L P+ L+L E LEQL++LENGY+++ +K   +A GV+  ED+E +   +R
Sbjct:  101 LISPENIDLALEPFFTETPPDCSTLVFPLLPEDFRQLEDINTVKVVMDNAGYALYFSRSPIPYQR--QISTSTECYRHIGLYAFRADVLHAFASLAPSMLELAESLEQLRLLENGYRIRCVKTTRDAPGVNTYEDLELVRQLLR 242          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri (strain MJ11) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P II  V + L  +   + + AVT  + +D F+PN VK V D  GYA+YFSR  IP+++     G+     P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD PED+EK+ + +
Sbjct:  103 LIPPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDLEKVRAIL 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBF1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P II  V + L  +   + + AVT  + +D F+PN VK V D  GYA+YFSR  IP+++     G+     P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD PED+EK+ + +
Sbjct:  103 LIPPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDLEKVRAIL 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 422
            + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  110 LSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 422
            + P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  110 LSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURTA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMRER 431
            LI+P+++  V   L A P    +TA   + +  + F+PN VK V+D +G A+YFSR  IP+++   +           P  P   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V+  +H    G+D P D+E++++  R R
Sbjct:  107 LIDPQLVCDVASHLAAHPSCAIATAAHPIHEAHEVFNPNYVKVVLDANGVALYFSRAPIPWSRDAYLPHWPNIAAMPAPTCPVYRHIGLYAYRARFLRTYPTLAQAPIEAAEQLEQLRAMWHGERIAVLVTEHAPEAGIDTPADLERVQALFRSR 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOBB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 410
            LI+P +ID  ++ L   P    +T    +K   D   PN VK V D  G  +YFSR  +P+ +           V+ +     H+G+  Y   FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P D++K+
Sbjct:  101 LIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKLLCYKHVGLYVYRREFLPVFAGLQPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTPADLDKV 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLMU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum GN=kdsB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 422
            + P IIDG+V+ L+  P    +T VT     DA   N +VKCV D  G A+YFSR +IP N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE+G  + V  V +     VD PED+ K+E ++
Sbjct:  110 LSPSIIDGLVEMLEGNPAIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNFKRST----PIYLHIGVYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYVHVVQNATGPSVDYPEDISKVEQYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_AZOSE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Azoarcus sp. (strain EbN1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIES 416
            LIEP++I  V +AL   P A  +TA   L    + F+PN VK V D H +A+YFSR  IP+ +      +       P L H+G+ +Y   FL+ Y  L P+PL+  E LEQL+ L +G++++V+ V    A GVD PED+E++ +
Sbjct:  104 LIEPKLIAAVAQALADDPVAAIATAAHPLHAAAELFNPNVVKVVCDAHDHALYFSRAPIPWARDAFATARDDIPAGLPVLRHVGLYAYRVAFLRCYASLAPSPLEQWEALEQLRALWHGHRIRVMTVAVAPAAGVDTPEDLERVRA 249          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain FRC-32) GN=kdsB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            LI+P +ID  +  L      +  T  T +K   D   PN VK V D  GYA+YFSR  +P N   K N          +     H+G+  Y   FL  +  + PT L++ E LEQL+VLENGY++KV++ D E+ GVD P D++K+   +++R
Sbjct:  101 LIDPAMIDEAISPLAEDSSLLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFSSRKLLCFKHVGLYVYRREFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDFESIGVDTPGDLDKVLERLKDR 252          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_CHLPD1.599e-1938.193-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBFM2.088e-1939.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBF12.088e-1939.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTR2.088e-1939.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTA2.088e-1939.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURTA2.088e-1932.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOBB2.727e-1936.553-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLMU2.727e-1940.433-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_AZOSE3.562e-1939.043-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSF4.652e-1937.253-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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