CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ANADF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=kdsB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 50/140 (35.71%), Postives = 84/140 (60.00%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422
            LIEPE I+ +V+A++   +   +T    L+PE+      VK V D HG A+YFSR  IP+ ++G V+       H+GI ++ + FL+ +  L P  L+ EE LEQL+ LE+G++++V    +   G+D PED+++  + +
Sbjct:  103 LIEPEAIETLVRAMEGGVE--MATLARPLEPEELERTQVVKVVTDRHGDALYFSRAPIPHRRAGGVSALAR--AHVGIYAFTAAFLQEFAALPPGRLEAEESLEQLRALEHGHRIRVADTAYRGFGIDTPEDLDRARALL 238          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PSEHT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ-----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-----GVDAPEDVEKIESFMRERN 434
            L+ PE +  V   L    AP A  S A+   + ED F+PN VK V D +  A+YFSR  IP+++S  +  Q      P+  H+GI +Y + F+K Y  L  +PL+  E LEQL+VL +GY +K+     +AH     GVD PED+ K+ S+++ ++
Sbjct:  103 LLAPENVSQVATLLNESTAPMATLSVAIE--EQEDVFNPNAVKVVSDINKNALYFSRASIPFDRSAMMGEQSTLDLTPFQRHVGIYAYRAGFIKQYIELSVSPLEQLESLEQLRVLYHGYNIKI----EQAHITPQAGVDTPEDLAKVISYLQSKH 252          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_LEPBL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIESFMRER 431
            IEPE+IDGV     + P+   STA   L       DPNRVK ++D +G AIYFSR LIP     +     P   HLGI  YD +FL  Y  L  + L+  E LEQL+ +E GY + V         VD P D+E  IE F + +
Sbjct:  104 IEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGIYGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGVYLAQEAGLSVDTPADLEVVIEDFKKRK 243          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_LEPBJ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIESFMRER 431
            IEPE+IDGV     + P+   STA   L       DPNRVK ++D +G AIYFSR LIP     +     P   HLGI  YD +FL  Y  L  + L+  E LEQL+ +E GY + V         VD P D+E  IE F + +
Sbjct:  104 IEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGIYGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGVYLAQEAGLSVDTPADLEVVIEDFKKRK 243          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DECAR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Dechloromonas aromatica (strain RCB) GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS-------GKVNP-QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERN 434
            LIEPE+I    + L A+   + + A       D F+PN VK V    G A YFSR  IPY +        G+  P  FP   H+G+ +Y ++FLK Y GL P P +  E LEQL+ L +GY++ V  +D   A GVD PED E++       N
Sbjct:  106 LIEPEVIIQTARQLAASGADIATVAHPITDAADFFNPNVVKVVCRADGDAAYFSRAPIPYARDHFAKEDGGETLPANFPAYRHVGLYAYRASFLKAYAGLMPAPTEHFESLEQLRALWHGYRISVTLIDAAPAPGVDTPEDAERMRKLFDRAN 258          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_LEPIN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira interrogans GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 59/147 (40.14%), Postives = 77/147 (52.38%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 440
            IEPE+IDGV     + P+   STA   L     A D NRVK ++D +G AIYFSR LIP     +     P   HLGI  YD +FL  Y  L  + L+  E LEQL+ +E GY + +         VD P D+E  IE F + + +S
Sbjct:  105 IEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGIYGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGIYLSKEAGLSVDTPADLEIVIEDFKKRKWIS 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_LEPIC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 59/147 (40.14%), Postives = 77/147 (52.38%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 440
            IEPE+IDGV     + P+   STA   L     A D NRVK ++D +G AIYFSR LIP     +     P   HLGI  YD +FL  Y  L  + L+  E LEQL+ +E GY + +         VD P D+E  IE F + + +S
Sbjct:  105 IEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGIYGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGIYLSKEAGLSVDTPADLEIVIEDFKKRKWIS 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ALISL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=kdsB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P II  V K L  +   + + AVT  + ED F+PN VK V D  GYA+YFSR  IP+++     G+     P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD  ED++K+ + +
Sbjct:  103 LIPPSIIRQVAKNLADSIAPMATLAVTIDEEEDVFNPNAVKVVTDAEGYALYFSRAAIPWDRDAFAKGEALTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTQEDLDKVRAIL 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium tepidum GN=kdsB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = 3
Query:    3 LIEPEIID-GVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            LI+P  ID  +       P    +T V  LKP++     DP+ VK V+D  G A+YFSR  IPY +  +  P   Y  H+G+ ++ ++ LK +  L P+ L+  E LEQL++LENGY+++ I+   +  GV+  E++E++    RER
Sbjct:  101 LIDPATIDLAIAPFFGEGPLPDCTTLVFPLKPDERQIIDDPHVVKAVLDTRGNALYFSRSPIPYRR--ETLPDTKYYRHIGLYAFRADVLKAFVALPPSMLERAESLEQLRLLENGYRIRCIETTTDTPGVNTEEELEEVRRLFRER 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBVY (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio vulnificus (strain YJ016) GN=kdsB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRERN 434
            LI P II  V + L A  AP A    A+TS   E+ F+PN VK V D  GYA+YFSR  IP+++     G+V  +   + H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +    GVD PED+E +   +  ++
Sbjct:  103 LIPPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDRDAFARGEVLTEHSLMRHIGIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIHVELAKEAPPAGVDTPEDLELVRKIIAAKS 251          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_ANADF4.652e-1935.713-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEHT7.935e-1937.823-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPBL1.036e-1840.973-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPBJ1.036e-1840.973-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DECAR1.036e-1838.563-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPIN1.354e-1840.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPIC1.354e-1840.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ALISL1.354e-1839.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTE1.768e-1836.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBVY2.309e-1838.413-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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