CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBVU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio vulnificus GN=kdsB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRERN 434
            LI P II  V + L A  AP A    A+TS   E+ F+PN VK V D  GYA+YFSR  IP+++     G+V  +   + H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +    GVD PED+E +   +  ++
Sbjct:  103 LIPPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDRDAFARGEVLTEHSLMRHIGIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIHVELAKEAPPAGVDTPEDLELVRELIAAKS 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLP8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=kdsB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 3
Query:    3 LIEPEIID-GVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            LI+P  ID  +    +  P    +T V  LKP++     DP+ VK V+D  G A+YFSR  IPY +  +  P   Y  H+G+ ++ ++ LK +  L P+ L+  E LEQL++LENGY+++ I+   +  GV+  E++E++    RER
Sbjct:  101 LIDPATIDLAIAPFFEDGPMPDCTTLVFPLKPDERHIIDDPHVVKAVLDAKGNALYFSRCPIPYRR--ETLPDTRYYRHIGLYAFRADVLKAFVALPPSMLERTESLEQLRLLENGYRIRCIETTTDTPGVNTEEELEEVRRLFRER 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_KLEP7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=kdsB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I P I+  V + L A+   + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++      +       L H+GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + +R
Sbjct:  103 MIPPAIVRQVAENLAASSSGMATLAVPIHDAEEAFNPNAVKVVMDAKGYALYFSRATIPWDRDRFAQSRETIGDSLLRHIGIYGYRAGFIRRYVSWAPSPLEQIEMLEQLRVLWYGEKIHVAVAAEVPGTGVDTPEDLERVRAELR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sulfurreducens GN=kdsB PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 52/145 (35.86%), Postives = 78/145 (53.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 410
            LIEP +ID  +  L   P     T  + ++   D   PN VK V D  GYA+YFSR  +P+ +            + +     H+G+  Y  +FL  +  + PT L+L E LEQL+ LENG +++V++  HE+ GVD P D+EK+
Sbjct:  101 LIEPAMIDEAIAPLAENPAVRMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPFFRDKWNDLKDESFASGRLLCYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQLRALENGCRIRVVETAHESIGVDTPNDLEKV 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOMG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=kdsB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP--------YNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 410
            LIEP +ID  +  L A       T  + +K   D   PN VK V D  G A+YFSR  +P              V  +     H+G+  Y  +FL  +  + PTPL+L E LEQL+VLENG++++V++   E+ GVD P D++K+
Sbjct:  101 LIEPAMIDEAIAPLVADASIRMGTLKSRIKSLHDFLSPNVVKVVTDREGDALYFSRSPLPNFRDKWNDLKDEAFVTGRLLCYKHVGLYVYRRDFLLAFARMAPTPLELAEKLEQLRVLENGFRIRVVETSFESIGVDTPSDLDKV 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOLS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kdsB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 428
            LI+P +I+  ++     P     T  + +K   D   PN VK V DN+GYA+YFSR  +P+ +            + +     H+G+  Y  NFL  Y  +  T L+L E LEQL+ LENG +++V++ + E+ GVD P+D+ K +  M++
Sbjct:  101 LIDPAMINQAIEPFLGNPGLKMGTLKSRVKCLHDFLSPNVVKVVTDNNGYALYFSRSPLPFFRDKWQDLKDEAFASGRLLCFKHVGLYVYQRNFLLEYAAMPQTFLELSEKLEQLRALENGIRIRVVETEFESLGVDTPDDLNKAKERMKQ 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_WOLSU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Wolinella succinogenes GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 48/138 (34.78%), Postives = 81/138 (58.70%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAP----DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 407
            +EPE+I  + + +Q A         ++A   +  E+A DPN VK V+DNH  A+YFSR  IP+ +    +    Y  HLG+ +Y  + L+ +  L  +PL+  E LEQL+ L +G+K+ +I+V+  + G+D P+D+ +
Sbjct:   99 LEPEVIASLKEKMQEASLGDSPPFMASAYKKVSQEEASDPNLVKVVLDNHSCALYFSRSPIPFWRDCTESTPLFYRGHLGLYAYTGSSLQAFCALPSSPLEEIEKLEQLRALSHGHKILMIEVETRSFGIDTPQDLNR 236          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBHB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 431
            LI P II  V   L      + + AV     E+ F+PN VK V D  GYA+YFSR  IP+++            P +LH+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD PED+E + + + ++
Sbjct:  103 LIPPSIIRQVADNLAGCDAPMATLAVEIESEEEVFNPNAVKVVADERGYAMYFSRATIPWDRDNFAKQDKTIANPLMLHIGIYAYRAGFINTYVNWQPSALEQIECLEQLRVLWYGEKIHVEVAKEAPAAGVDTPEDLESVRAIVAKQ 250          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_KLEP3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Klebsiella pneumoniae (strain 342) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I P I+  V + L ++   + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++    + +       L H+GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + +R
Sbjct:  103 MIPPAIVRQVAENLASSSSGMATLAVPIHDAEEAFNPNAVKVVMDAQGYALYFSRATIPWDRDRFAHSRETIGDSLLRHIGIYGYRAGFIRRYVSWAPSPLEQIEMLEQLRVLWYGEKIHVAVAAEVPGTGVDTPEDLERVRAELR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BORPD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=kdsB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIES 416
            LI+P ++D V   LQA+PDA  +T    L   +A F+PN VK V    G A+YFSR  IP+ +           P  P L H+G+ +Y + FL+ +P L    L+  E LEQL+ LE+G+ + V +       GVD P D+E++ +
Sbjct:  103 LIDPALVDAVAATLQASPDAAIATCACPLADAEALFNPNVVKVVCGAGGRALYFSRAPIPWARDALAGGTRVLAPGLPALHHIGLYAYRAGFLRRFPALPQGALEHYEALEQLRALEHGHAIVVHRTPQPPMAGVDTPADLERVRA 248          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_VIBVU2.309e-1838.413-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLP82.309e-1836.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_KLEP75.143e-1836.993-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSL5.143e-1835.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOMG5.143e-1836.553-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOLS5.143e-1833.773-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_WOLSU6.718e-1834.783-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBHB6.718e-1836.493-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_KLEP36.718e-1836.303-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BORPD6.718e-1836.993-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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